Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2526

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2525 and GFF2526 are separated by 238 nucleotidesGFF2526 and GFF2527 are separated by 148 nucleotides GFF2525 - Uptake hydrogenase small subunit precursor (EC 1.12.99.6), at 39,418 to 40,410 GFF2525 GFF2526 - hypothetical protein, at 40,649 to 40,801 GFF2526 GFF2527 - Choloylglycine hydrolase (EC 3.5.1.24), at 40,950 to 42,041 GFF2527 Position (kb) 40 41Strain fitness (log2 ratio) -1 0 1at 39.705 kb on + strand, within GFF2525at 39.738 kb on - strand, within GFF2525at 39.903 kb on - strand, within GFF2525at 39.903 kb on - strand, within GFF2525at 39.999 kb on + strand, within GFF2525at 40.188 kb on - strand, within GFF2525at 40.357 kb on + strandat 40.378 kb on - strandat 40.392 kb on - strandat 40.397 kb on - strandat 40.397 kb on - strandat 40.542 kb on - strandat 40.543 kb on + strandat 40.722 kb on - strand, within GFF2526at 41.322 kb on + strand, within GFF2527at 41.740 kb on - strand, within GFF2527

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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39,705 + GFF2525 0.29 -0.2
39,738 - GFF2525 0.32 -0.1
39,903 - GFF2525 0.49 -0.4
39,903 - GFF2525 0.49 +1.2
39,999 + GFF2525 0.59 -0.2
40,188 - GFF2525 0.78 +0.5
40,357 + -0.1
40,378 - -0.1
40,392 - -1.2
40,397 - +0.1
40,397 - +0.4
40,542 - -1.0
40,543 + +0.0
40,722 - GFF2526 0.48 -0.3
41,322 + GFF2527 0.34 -0.0
41,740 - GFF2527 0.72 -1.2

Or see this region's nucleotide sequence