Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2348

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2347 and GFF2348 overlap by 18 nucleotidesGFF2348 and GFF2349 are separated by 267 nucleotidesGFF2349 and GFF2350 are separated by 15 nucleotides GFF2347 - Hydrogen peroxide-inducible genes activator, at 142,004 to 142,921 GFF2347 GFF2348 - Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1), at 142,904 to 144,238 GFF2348 GFF2349 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 144,506 to 145,138 GFF2349 GFF2350 - Putative inner membrane protein, at 145,154 to 145,513 GFF2350 Position (kb) 142 143 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1at 141.917 kb on - strandat 141.959 kb on - strandat 141.964 kb on - strandat 141.964 kb on - strandat 142.025 kb on + strandat 142.111 kb on - strand, within GFF2347at 142.115 kb on - strand, within GFF2347at 142.189 kb on - strand, within GFF2347at 142.216 kb on - strand, within GFF2347at 142.328 kb on - strand, within GFF2347at 142.370 kb on + strand, within GFF2347at 142.371 kb on - strand, within GFF2347at 142.435 kb on + strand, within GFF2347at 142.712 kb on - strand, within GFF2347at 142.714 kb on + strand, within GFF2347at 142.714 kb on + strand, within GFF2347at 142.720 kb on - strand, within GFF2347at 142.751 kb on - strand, within GFF2347at 142.848 kb on - strandat 142.966 kb on - strandat 142.970 kb on - strandat 142.970 kb on - strandat 143.165 kb on - strand, within GFF2348at 143.409 kb on + strand, within GFF2348at 143.414 kb on - strand, within GFF2348at 143.414 kb on - strand, within GFF2348at 143.506 kb on - strand, within GFF2348at 143.586 kb on + strand, within GFF2348at 143.814 kb on + strand, within GFF2348at 143.984 kb on - strand, within GFF2348at 143.992 kb on - strand, within GFF2348at 144.007 kb on + strand, within GFF2348at 144.022 kb on + strand, within GFF2348at 144.023 kb on - strand, within GFF2348at 144.308 kb on - strandat 144.311 kb on - strandat 144.464 kb on + strandat 144.465 kb on - strandat 144.465 kb on - strandat 144.466 kb on + strandat 144.467 kb on - strandat 144.476 kb on + strandat 144.476 kb on + strandat 144.800 kb on - strand, within GFF2349at 144.917 kb on + strand, within GFF2349at 144.978 kb on + strand, within GFF2349at 144.978 kb on + strand, within GFF2349at 144.979 kb on - strand, within GFF2349at 144.982 kb on + strand, within GFF2349at 144.982 kb on + strand, within GFF2349at 144.982 kb on + strand, within GFF2349at 145.089 kb on - strandat 145.091 kb on + strandat 145.119 kb on + strandat 145.152 kb on + strandat 145.181 kb on - strandat 145.217 kb on - strand, within GFF2350

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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141,917 - -0.0
141,959 - +0.6
141,964 - -0.0
141,964 - -0.2
142,025 + -0.3
142,111 - GFF2347 0.12 +0.1
142,115 - GFF2347 0.12 -0.4
142,189 - GFF2347 0.20 -0.2
142,216 - GFF2347 0.23 -1.2
142,328 - GFF2347 0.35 +0.1
142,370 + GFF2347 0.40 -0.4
142,371 - GFF2347 0.40 -0.7
142,435 + GFF2347 0.47 +0.3
142,712 - GFF2347 0.77 -0.1
142,714 + GFF2347 0.77 +0.1
142,714 + GFF2347 0.77 -0.3
142,720 - GFF2347 0.78 -0.7
142,751 - GFF2347 0.81 -0.2
142,848 - -0.8
142,966 - +0.3
142,970 - +0.2
142,970 - -1.2
143,165 - GFF2348 0.20 +0.8
143,409 + GFF2348 0.38 -1.1
143,414 - GFF2348 0.38 -0.8
143,414 - GFF2348 0.38 -2.8
143,506 - GFF2348 0.45 -0.2
143,586 + GFF2348 0.51 -2.5
143,814 + GFF2348 0.68 -0.6
143,984 - GFF2348 0.81 -0.1
143,992 - GFF2348 0.81 +0.2
144,007 + GFF2348 0.83 -0.6
144,022 + GFF2348 0.84 -2.2
144,023 - GFF2348 0.84 -0.7
144,308 - +1.2
144,311 - -1.6
144,464 + +0.2
144,465 - +1.1
144,465 - -0.5
144,466 + -0.4
144,467 - -0.1
144,476 + +0.7
144,476 + +1.0
144,800 - GFF2349 0.46 +0.0
144,917 + GFF2349 0.65 +1.1
144,978 + GFF2349 0.75 -0.1
144,978 + GFF2349 0.75 +0.6
144,979 - GFF2349 0.75 -0.0
144,982 + GFF2349 0.75 -0.3
144,982 + GFF2349 0.75 -0.4
144,982 + GFF2349 0.75 +0.0
145,089 - -0.2
145,091 + +0.1
145,119 + +0.0
145,152 + +0.4
145,181 - +0.2
145,217 - GFF2350 0.17 +0.4

Or see this region's nucleotide sequence