Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2324 and GFF2325 are separated by 115 nucleotides GFF2325 and GFF2326 are separated by 2 nucleotides GFF2326 and GFF2327 are separated by 234 nucleotides
GFF2324 - Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3), at 109,800 to 112,232
GFF2324
GFF2325 - Small-conductance mechanosensitive channel, at 112,348 to 113,205
GFF2325
GFF2326 - FIG01046298: hypothetical protein, at 113,208 to 114,206
GFF2326
GFF2327 - FIG074102: hypothetical protein, at 114,441 to 115,565
GFF2327
Position (kb)
113
114
115 Strain fitness (log2 ratio)
-1
0
1 at 112.234 kb on - strand at 112.310 kb on - strand at 112.310 kb on - strand at 112.315 kb on + strand at 112.316 kb on - strand at 112.317 kb on + strand at 112.318 kb on - strand at 112.405 kb on - strand at 112.457 kb on + strand, within GFF2325 at 112.457 kb on + strand, within GFF2325 at 112.457 kb on + strand, within GFF2325 at 112.458 kb on - strand, within GFF2325 at 112.557 kb on + strand, within GFF2325 at 112.582 kb on - strand, within GFF2325 at 112.591 kb on + strand, within GFF2325 at 112.591 kb on + strand, within GFF2325 at 112.798 kb on + strand, within GFF2325 at 112.933 kb on + strand, within GFF2325 at 112.934 kb on - strand, within GFF2325 at 113.075 kb on - strand, within GFF2325 at 113.246 kb on + strand at 113.247 kb on - strand at 113.328 kb on + strand, within GFF2326 at 113.395 kb on - strand, within GFF2326 at 113.395 kb on - strand, within GFF2326 at 113.984 kb on + strand, within GFF2326 at 114.044 kb on + strand, within GFF2326 at 114.603 kb on + strand, within GFF2327 at 114.798 kb on - strand, within GFF2327 at 114.909 kb on + strand, within GFF2327 at 114.909 kb on + strand, within GFF2327 at 114.910 kb on - strand, within GFF2327 at 115.013 kb on + strand, within GFF2327 at 115.016 kb on + strand, within GFF2327 at 115.199 kb on + strand, within GFF2327
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 112,234 - +0.6 112,310 - +1.1 112,310 - -0.6 112,315 + -0.3 112,316 - -0.1 112,317 + -0.0 112,318 - +0.1 112,405 - -0.1 112,457 + GFF2325 0.13 -0.3 112,457 + GFF2325 0.13 -0.0 112,457 + GFF2325 0.13 -0.0 112,458 - GFF2325 0.13 +0.4 112,557 + GFF2325 0.24 -0.1 112,582 - GFF2325 0.27 +0.3 112,591 + GFF2325 0.28 +0.3 112,591 + GFF2325 0.28 -0.1 112,798 + GFF2325 0.52 +0.2 112,933 + GFF2325 0.68 +0.1 112,934 - GFF2325 0.68 +0.1 113,075 - GFF2325 0.85 +0.0 113,246 + +0.2 113,247 - +0.3 113,328 + GFF2326 0.12 -0.2 113,395 - GFF2326 0.19 +1.6 113,395 - GFF2326 0.19 +0.5 113,984 + GFF2326 0.78 +0.2 114,044 + GFF2326 0.84 -0.2 114,603 + GFF2327 0.14 -0.5 114,798 - GFF2327 0.32 -0.6 114,909 + GFF2327 0.42 +0.3 114,909 + GFF2327 0.42 +0.2 114,910 - GFF2327 0.42 -0.3 115,013 + GFF2327 0.51 +0.2 115,016 + GFF2327 0.51 -0.2 115,199 + GFF2327 0.67 +0.3
Or see this region's nucleotide sequence