Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2216

Experiment: LB_plus_SM_buffer

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2214 and GFF2215 are separated by 242 nucleotidesGFF2215 and GFF2216 are separated by 58 nucleotidesGFF2216 and GFF2217 are separated by 334 nucleotides GFF2214 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 3,759 to 4,622 GFF2214 GFF2215 - hypothetical protein, at 4,865 to 4,996 GFF2215 GFF2216 - DNA polymerase I (EC 2.7.7.7), at 5,055 to 7,841 GFF2216 GFF2217 - GTP-binding protein EngB, at 8,176 to 8,808 GFF2217 Position (kb) 5 6 7 8Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4.229 kb on - strand, within GFF2214at 4.260 kb on - strand, within GFF2214at 4.264 kb on - strand, within GFF2214at 4.326 kb on - strand, within GFF2214at 4.391 kb on + strand, within GFF2214at 4.392 kb on - strand, within GFF2214at 4.392 kb on - strand, within GFF2214at 4.401 kb on + strand, within GFF2214at 4.440 kb on + strand, within GFF2214at 4.441 kb on - strand, within GFF2214at 4.501 kb on + strand, within GFF2214at 4.501 kb on + strand, within GFF2214at 4.502 kb on - strand, within GFF2214at 4.502 kb on - strand, within GFF2214at 4.502 kb on - strand, within GFF2214at 4.542 kb on - strandat 4.670 kb on + strandat 4.744 kb on + strandat 4.793 kb on + strandat 5.009 kb on + strandat 5.010 kb on - strandat 6.140 kb on + strand, within GFF2216at 6.322 kb on - strand, within GFF2216at 6.378 kb on - strand, within GFF2216at 6.393 kb on + strand, within GFF2216at 6.464 kb on + strand, within GFF2216at 6.972 kb on + strand, within GFF2216at 6.972 kb on + strand, within GFF2216at 7.060 kb on + strand, within GFF2216at 7.150 kb on - strand, within GFF2216at 7.170 kb on + strand, within GFF2216at 7.171 kb on - strand, within GFF2216at 7.190 kb on + strand, within GFF2216at 7.193 kb on + strand, within GFF2216at 7.193 kb on + strand, within GFF2216at 7.295 kb on + strand, within GFF2216at 7.397 kb on + strand, within GFF2216at 7.414 kb on - strand, within GFF2216at 7.438 kb on - strand, within GFF2216at 7.456 kb on - strand, within GFF2216at 7.456 kb on - strand, within GFF2216at 7.494 kb on + strand, within GFF2216at 7.495 kb on - strand, within GFF2216at 7.524 kb on + strand, within GFF2216at 7.524 kb on + strand, within GFF2216at 7.686 kb on - strandat 7.701 kb on + strandat 7.874 kb on + strandat 7.875 kb on - strandat 8.004 kb on + strandat 8.014 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
remove
4,229 - GFF2214 0.54 -0.0
4,260 - GFF2214 0.58 -0.4
4,264 - GFF2214 0.58 -0.9
4,326 - GFF2214 0.66 -0.0
4,391 + GFF2214 0.73 -0.3
4,392 - GFF2214 0.73 +0.8
4,392 - GFF2214 0.73 -0.2
4,401 + GFF2214 0.74 +0.2
4,440 + GFF2214 0.79 +0.4
4,441 - GFF2214 0.79 +0.3
4,501 + GFF2214 0.86 -0.5
4,501 + GFF2214 0.86 -0.2
4,502 - GFF2214 0.86 -0.4
4,502 - GFF2214 0.86 -0.0
4,502 - GFF2214 0.86 +0.5
4,542 - -1.0
4,670 + +0.1
4,744 + -0.3
4,793 + +0.5
5,009 + +0.1
5,010 - -0.4
6,140 + GFF2216 0.39 -1.2
6,322 - GFF2216 0.45 -5.4
6,378 - GFF2216 0.47 -3.0
6,393 + GFF2216 0.48 -2.7
6,464 + GFF2216 0.51 -4.9
6,972 + GFF2216 0.69 -2.6
6,972 + GFF2216 0.69 -5.8
7,060 + GFF2216 0.72 -4.9
7,150 - GFF2216 0.75 -3.1
7,170 + GFF2216 0.76 -4.2
7,171 - GFF2216 0.76 -2.2
7,190 + GFF2216 0.77 -4.3
7,193 + GFF2216 0.77 -4.8
7,193 + GFF2216 0.77 -3.7
7,295 + GFF2216 0.80 -2.7
7,397 + GFF2216 0.84 -2.8
7,414 - GFF2216 0.85 -2.8
7,438 - GFF2216 0.86 -3.9
7,456 - GFF2216 0.86 -4.4
7,456 - GFF2216 0.86 -5.0
7,494 + GFF2216 0.88 -2.2
7,495 - GFF2216 0.88 -2.2
7,524 + GFF2216 0.89 -2.2
7,524 + GFF2216 0.89 -3.0
7,686 - -2.2
7,701 + -6.2
7,874 + +0.4
7,875 - -0.5
8,004 + +0.6
8,014 + +0.3

Or see this region's nucleotide sequence