Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1902

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1901 and GFF1902 are separated by 217 nucleotidesGFF1902 and GFF1903 are separated by 48 nucleotides GFF1901 - Phosphate acetyltransferase (EC 2.3.1.8), at 95,608 to 97,752 GFF1901 GFF1902 - Putative S-transferase, at 97,970 to 99,490 GFF1902 GFF1903 - Transketolase, C-terminal section (EC 2.2.1.1), at 99,539 to 100,492 GFF1903 GFF1904 - Transketolase, N-terminal section (EC 2.2.1.1), at 100,485 to 101,315 GFF1904 Position (kb) 97 98 99 100Strain fitness (log2 ratio) -2 -1 0 1at 97.204 kb on - strand, within GFF1901at 97.706 kb on - strandat 97.756 kb on + strandat 97.764 kb on - strandat 97.799 kb on + strandat 97.862 kb on - strandat 97.937 kb on - strandat 98.095 kb on + strandat 98.308 kb on + strand, within GFF1902at 98.314 kb on + strand, within GFF1902at 98.314 kb on + strand, within GFF1902at 98.314 kb on + strand, within GFF1902at 98.387 kb on - strand, within GFF1902at 98.430 kb on + strand, within GFF1902at 98.497 kb on + strand, within GFF1902at 98.497 kb on + strand, within GFF1902at 98.835 kb on + strand, within GFF1902at 98.836 kb on - strand, within GFF1902at 98.836 kb on - strand, within GFF1902at 98.856 kb on + strand, within GFF1902at 98.978 kb on - strand, within GFF1902at 99.124 kb on + strand, within GFF1902at 99.154 kb on + strand, within GFF1902at 99.157 kb on + strand, within GFF1902at 99.163 kb on + strand, within GFF1902at 99.203 kb on - strand, within GFF1902at 99.334 kb on + strand, within GFF1902at 99.337 kb on + strand, within GFF1902at 99.338 kb on - strand, within GFF1902at 99.338 kb on - strand, within GFF1902at 99.342 kb on - strandat 99.442 kb on + strandat 99.443 kb on - strandat 99.529 kb on - strandat 99.540 kb on + strandat 99.887 kb on - strand, within GFF1903at 99.887 kb on - strand, within GFF1903at 99.887 kb on - strand, within GFF1903at 99.893 kb on - strand, within GFF1903at 99.954 kb on + strand, within GFF1903at 99.958 kb on + strand, within GFF1903at 99.959 kb on - strand, within GFF1903at 99.983 kb on - strand, within GFF1903at 100.023 kb on - strand, within GFF1903at 100.111 kb on + strand, within GFF1903at 100.174 kb on + strand, within GFF1903at 100.240 kb on + strand, within GFF1903at 100.240 kb on + strand, within GFF1903at 100.241 kb on - strand, within GFF1903at 100.307 kb on - strand, within GFF1903at 100.374 kb on - strand, within GFF1903at 100.393 kb on + strand, within GFF1903at 100.466 kb on - strandat 100.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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97,204 - GFF1901 0.74 -0.4
97,706 - -2.2
97,756 + +0.2
97,764 - +0.3
97,799 + +0.2
97,862 - +0.2
97,937 - +0.2
98,095 + -0.4
98,308 + GFF1902 0.22 +0.5
98,314 + GFF1902 0.23 +0.2
98,314 + GFF1902 0.23 +0.4
98,314 + GFF1902 0.23 +0.4
98,387 - GFF1902 0.27 -0.8
98,430 + GFF1902 0.30 +1.3
98,497 + GFF1902 0.35 +0.8
98,497 + GFF1902 0.35 +0.6
98,835 + GFF1902 0.57 +0.1
98,836 - GFF1902 0.57 +0.2
98,836 - GFF1902 0.57 +0.5
98,856 + GFF1902 0.58 +0.3
98,978 - GFF1902 0.66 +0.4
99,124 + GFF1902 0.76 -0.0
99,154 + GFF1902 0.78 -0.0
99,157 + GFF1902 0.78 +0.2
99,163 + GFF1902 0.78 +0.2
99,203 - GFF1902 0.81 -1.0
99,334 + GFF1902 0.90 +0.4
99,337 + GFF1902 0.90 +0.2
99,338 - GFF1902 0.90 +0.3
99,338 - GFF1902 0.90 +0.3
99,342 - -0.1
99,442 + -0.5
99,443 - +0.1
99,529 - -0.5
99,540 + -0.2
99,887 - GFF1903 0.36 +0.2
99,887 - GFF1903 0.36 +0.2
99,887 - GFF1903 0.36 +1.0
99,893 - GFF1903 0.37 +1.6
99,954 + GFF1903 0.44 -0.5
99,958 + GFF1903 0.44 +0.4
99,959 - GFF1903 0.44 +0.2
99,983 - GFF1903 0.47 -0.4
100,023 - GFF1903 0.51 +0.0
100,111 + GFF1903 0.60 +0.0
100,174 + GFF1903 0.67 +0.3
100,240 + GFF1903 0.73 +0.1
100,240 + GFF1903 0.73 +1.2
100,241 - GFF1903 0.74 +0.2
100,307 - GFF1903 0.81 +0.3
100,374 - GFF1903 0.88 -0.2
100,393 + GFF1903 0.90 -0.3
100,466 - -0.0
100,487 - -0.6

Or see this region's nucleotide sequence