Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1859

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1858 and GFF1859 are separated by 2 nucleotidesGFF1859 and GFF1860 overlap by 4 nucleotides GFF1858 - UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-), at 50,346 to 51,503 GFF1858 GFF1859 - Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-), at 51,506 to 52,489 GFF1859 GFF1860 - UDP-glucuronic acid oxidase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305) / UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.13), at 52,486 to 54,468 GFF1860 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1at 50.594 kb on + strand, within GFF1858at 50.619 kb on - strand, within GFF1858at 50.623 kb on + strand, within GFF1858at 50.702 kb on + strand, within GFF1858at 50.738 kb on + strand, within GFF1858at 50.751 kb on + strand, within GFF1858at 50.784 kb on + strand, within GFF1858at 50.784 kb on + strand, within GFF1858at 50.851 kb on - strand, within GFF1858at 51.276 kb on - strand, within GFF1858at 51.276 kb on - strand, within GFF1858at 51.347 kb on + strand, within GFF1858at 51.360 kb on + strand, within GFF1858at 51.491 kb on - strandat 51.502 kb on - strandat 51.502 kb on - strandat 51.555 kb on - strandat 51.643 kb on - strand, within GFF1859at 51.938 kb on - strand, within GFF1859at 52.024 kb on + strand, within GFF1859at 52.025 kb on - strand, within GFF1859at 52.140 kb on - strand, within GFF1859at 52.148 kb on - strand, within GFF1859at 52.169 kb on + strand, within GFF1859at 52.169 kb on + strand, within GFF1859at 52.170 kb on - strand, within GFF1859at 52.267 kb on + strand, within GFF1859at 52.268 kb on - strand, within GFF1859at 52.315 kb on - strand, within GFF1859at 52.315 kb on - strand, within GFF1859at 52.319 kb on - strand, within GFF1859at 52.385 kb on + strand, within GFF1859at 52.386 kb on - strand, within GFF1859at 52.400 kb on + strandat 52.401 kb on - strandat 52.671 kb on - strandat 52.671 kb on - strandat 52.732 kb on + strand, within GFF1860at 52.733 kb on - strand, within GFF1860at 52.733 kb on - strand, within GFF1860at 52.980 kb on - strand, within GFF1860at 53.004 kb on + strand, within GFF1860at 53.004 kb on + strand, within GFF1860at 53.005 kb on - strand, within GFF1860at 53.008 kb on - strand, within GFF1860at 53.039 kb on + strand, within GFF1860at 53.040 kb on - strand, within GFF1860at 53.040 kb on - strand, within GFF1860at 53.070 kb on + strand, within GFF1860at 53.071 kb on - strand, within GFF1860at 53.075 kb on - strand, within GFF1860at 53.075 kb on - strand, within GFF1860at 53.075 kb on - strand, within GFF1860at 53.139 kb on + strand, within GFF1860at 53.140 kb on - strand, within GFF1860at 53.185 kb on + strand, within GFF1860at 53.185 kb on + strand, within GFF1860at 53.186 kb on - strand, within GFF1860at 53.186 kb on - strand, within GFF1860at 53.186 kb on - strand, within GFF1860at 53.208 kb on + strand, within GFF1860at 53.340 kb on + strand, within GFF1860at 53.340 kb on + strand, within GFF1860at 53.341 kb on - strand, within GFF1860at 53.464 kb on - strand, within GFF1860

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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50,594 + GFF1858 0.21 -0.3
50,619 - GFF1858 0.24 -1.8
50,623 + GFF1858 0.24 +0.0
50,702 + GFF1858 0.31 -0.6
50,738 + GFF1858 0.34 +0.2
50,751 + GFF1858 0.35 +0.5
50,784 + GFF1858 0.38 +0.6
50,784 + GFF1858 0.38 +1.3
50,851 - GFF1858 0.44 -0.1
51,276 - GFF1858 0.80 +0.6
51,276 - GFF1858 0.80 +0.7
51,347 + GFF1858 0.86 +0.0
51,360 + GFF1858 0.88 -0.1
51,491 - -0.6
51,502 - +1.0
51,502 - +0.8
51,555 - -0.2
51,643 - GFF1859 0.14 +0.8
51,938 - GFF1859 0.44 +0.1
52,024 + GFF1859 0.53 -0.2
52,025 - GFF1859 0.53 +1.0
52,140 - GFF1859 0.64 +0.8
52,148 - GFF1859 0.65 +0.2
52,169 + GFF1859 0.67 -0.6
52,169 + GFF1859 0.67 -0.1
52,170 - GFF1859 0.67 -0.3
52,267 + GFF1859 0.77 +0.5
52,268 - GFF1859 0.77 -0.3
52,315 - GFF1859 0.82 +1.3
52,315 - GFF1859 0.82 -0.5
52,319 - GFF1859 0.83 +0.2
52,385 + GFF1859 0.89 +1.0
52,386 - GFF1859 0.89 +0.4
52,400 + +0.6
52,401 - +0.4
52,671 - +0.1
52,671 - -0.2
52,732 + GFF1860 0.12 -0.2
52,733 - GFF1860 0.12 -0.1
52,733 - GFF1860 0.12 +0.7
52,980 - GFF1860 0.25 -0.8
53,004 + GFF1860 0.26 +0.2
53,004 + GFF1860 0.26 +0.3
53,005 - GFF1860 0.26 -0.3
53,008 - GFF1860 0.26 +0.2
53,039 + GFF1860 0.28 -0.2
53,040 - GFF1860 0.28 +0.3
53,040 - GFF1860 0.28 +0.8
53,070 + GFF1860 0.29 +0.7
53,071 - GFF1860 0.30 -0.2
53,075 - GFF1860 0.30 +0.8
53,075 - GFF1860 0.30 +0.7
53,075 - GFF1860 0.30 +0.0
53,139 + GFF1860 0.33 -0.9
53,140 - GFF1860 0.33 +0.2
53,185 + GFF1860 0.35 +0.1
53,185 + GFF1860 0.35 +0.6
53,186 - GFF1860 0.35 -1.4
53,186 - GFF1860 0.35 +0.7
53,186 - GFF1860 0.35 +0.5
53,208 + GFF1860 0.36 +0.3
53,340 + GFF1860 0.43 +1.0
53,340 + GFF1860 0.43 +0.2
53,341 - GFF1860 0.43 -0.0
53,464 - GFF1860 0.49 -1.2

Or see this region's nucleotide sequence