Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1852 and GFF1853 are separated by 13 nucleotides GFF1853 and GFF1854 are separated by 249 nucleotides
GFF1852 - L-rhamnonate dehydratase (EC 4.2.1.90), at 44,607 to 45,812
GFF1852
GFF1853 - Transcriptional regulator, IclR family, at 45,826 to 46,608
GFF1853
GFF1854 - Molybdopterin binding motif, CinA N-terminal domain / C-terminal domain of CinA type E, at 46,858 to 48,054
GFF1854
Position (kb) 45
46
47 Strain fitness (log2 ratio) -1
0
1 at 44.931 kb on - strand, within GFF1852 at 44.933 kb on + strand, within GFF1852 at 45.046 kb on + strand, within GFF1852 at 45.046 kb on + strand, within GFF1852 at 45.354 kb on - strand, within GFF1852 at 45.448 kb on + strand, within GFF1852 at 45.449 kb on - strand, within GFF1852 at 45.451 kb on + strand, within GFF1852 at 45.451 kb on + strand, within GFF1852 at 45.525 kb on - strand, within GFF1852 at 45.590 kb on + strand, within GFF1852 at 45.625 kb on - strand, within GFF1852 at 46.274 kb on + strand, within GFF1853 at 46.422 kb on - strand, within GFF1853 at 46.422 kb on - strand, within GFF1853 at 46.593 kb on + strand at 46.718 kb on + strand at 46.719 kb on - strand at 46.720 kb on + strand at 46.720 kb on + strand at 46.743 kb on + strand at 46.743 kb on + strand at 46.751 kb on - strand at 46.972 kb on + strand at 46.984 kb on - strand, within GFF1854 at 47.019 kb on - strand, within GFF1854 at 47.050 kb on - strand, within GFF1854 at 47.229 kb on - strand, within GFF1854 at 47.278 kb on + strand, within GFF1854 at 47.278 kb on + strand, within GFF1854
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 44,931 - GFF1852 0.27 +0.1 44,933 + GFF1852 0.27 -0.5 45,046 + GFF1852 0.36 +1.1 45,046 + GFF1852 0.36 +0.1 45,354 - GFF1852 0.62 +1.0 45,448 + GFF1852 0.70 -0.0 45,449 - GFF1852 0.70 +0.5 45,451 + GFF1852 0.70 +0.1 45,451 + GFF1852 0.70 -0.1 45,525 - GFF1852 0.76 +0.1 45,590 + GFF1852 0.82 +0.2 45,625 - GFF1852 0.84 +0.1 46,274 + GFF1853 0.57 +0.9 46,422 - GFF1853 0.76 +0.3 46,422 - GFF1853 0.76 -0.1 46,593 + -0.1 46,718 + -0.0 46,719 - +0.5 46,720 + -0.0 46,720 + +0.3 46,743 + +0.0 46,743 + +0.3 46,751 - -0.1 46,972 + +0.9 46,984 - GFF1854 0.11 -0.6 47,019 - GFF1854 0.13 -0.3 47,050 - GFF1854 0.16 +0.0 47,229 - GFF1854 0.31 -0.2 47,278 + GFF1854 0.35 +0.5 47,278 + GFF1854 0.35 +0.5
Or see this region's nucleotide sequence