Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF173 and GFF174 overlap by 17 nucleotides GFF174 and GFF175 are separated by 38 nucleotides GFF175 and GFF176 are separated by 118 nucleotides
GFF173 - Thiamin ABC transporter, transmembrane component, at 163,379 to 164,989
GFF173
GFF174 - Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ, at 164,973 to 165,680
GFF174
GFF175 - DedA family inner membrane protein YabI, at 165,719 to 166,486
GFF175
GFF176 - Arabinose operon regulatory protein, at 166,605 to 167,450
GFF176
Position (kb)
165
166
167 Strain fitness (log2 ratio)
-2
-1
0
1 at 164.790 kb on + strand, within GFF173 at 164.791 kb on - strand, within GFF173 at 164.859 kb on - strand at 164.864 kb on + strand at 164.865 kb on - strand at 164.978 kb on - strand at 165.026 kb on + strand at 165.026 kb on + strand at 165.753 kb on + strand at 165.754 kb on - strand at 165.754 kb on - strand at 165.755 kb on + strand at 165.829 kb on - strand, within GFF175 at 166.024 kb on - strand, within GFF175 at 166.160 kb on - strand, within GFF175 at 166.160 kb on - strand, within GFF175 at 166.443 kb on + strand at 166.462 kb on + strand at 166.463 kb on - strand at 166.486 kb on + strand at 166.486 kb on + strand at 166.487 kb on - strand at 166.487 kb on - strand at 166.487 kb on - strand at 166.487 kb on - strand at 166.487 kb on - strand at 166.563 kb on - strand at 166.563 kb on - strand at 166.566 kb on + strand at 166.567 kb on - strand at 166.573 kb on + strand at 166.573 kb on + strand at 166.606 kb on + strand at 166.788 kb on - strand, within GFF176 at 166.898 kb on - strand, within GFF176 at 166.898 kb on - strand, within GFF176 at 166.950 kb on - strand, within GFF176 at 166.961 kb on + strand, within GFF176 at 167.207 kb on - strand, within GFF176 at 167.238 kb on + strand, within GFF176 at 167.238 kb on + strand, within GFF176 at 167.316 kb on - strand, within GFF176 at 167.316 kb on - strand, within GFF176
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 164,790 + GFF173 0.88 +0.6 164,791 - GFF173 0.88 +0.1 164,859 - +0.0 164,864 + +0.5 164,865 - -0.0 164,978 - +0.1 165,026 + +0.3 165,026 + -0.0 165,753 + -0.2 165,754 - +0.4 165,754 - -0.6 165,755 + +1.1 165,829 - GFF175 0.14 -0.3 166,024 - GFF175 0.40 -1.0 166,160 - GFF175 0.57 -0.3 166,160 - GFF175 0.57 -0.5 166,443 + -1.0 166,462 + -0.2 166,463 - -0.5 166,486 + -0.4 166,486 + +0.5 166,487 - +0.2 166,487 - +0.6 166,487 - -0.4 166,487 - -2.3 166,487 - -1.0 166,563 - +0.2 166,563 - -0.1 166,566 + -0.3 166,567 - -0.3 166,573 + -0.5 166,573 + -0.4 166,606 + +0.6 166,788 - GFF176 0.22 +0.1 166,898 - GFF176 0.35 +0.5 166,898 - GFF176 0.35 +0.1 166,950 - GFF176 0.41 -0.0 166,961 + GFF176 0.42 +0.6 167,207 - GFF176 0.71 +0.3 167,238 + GFF176 0.75 -0.0 167,238 + GFF176 0.75 +0.0 167,316 - GFF176 0.84 -0.5 167,316 - GFF176 0.84 +0.6
Or see this region's nucleotide sequence