Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1669 and GFF1670 are separated by 10 nucleotides GFF1670 and GFF1671 overlap by 4 nucleotides GFF1671 and GFF1672 are separated by 124 nucleotides GFF1672 and GFF1673 are separated by 2 nucleotides
GFF1669 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 53,599 to 55,608
GFF1669
GFF1670 - Flagellar motor rotation protein MotB, at 55,619 to 56,548
GFF1670
GFF1671 - Flagellar motor rotation protein MotA, at 56,545 to 57,432
GFF1671
GFF1672 - Flagellar transcriptional activator FlhC, at 57,557 to 58,135
GFF1672
GFF1673 - Flagellar transcriptional activator FlhD, at 58,138 to 58,479
GFF1673
Position (kb) 56
57
58 Strain fitness (log2 ratio) -1
0
1 at 55.599 kb on + strand at 55.600 kb on - strand at 55.683 kb on - strand at 55.683 kb on - strand at 55.692 kb on - strand at 55.751 kb on + strand, within GFF1670 at 55.768 kb on + strand, within GFF1670 at 55.768 kb on + strand, within GFF1670 at 55.839 kb on - strand, within GFF1670 at 55.922 kb on - strand, within GFF1670 at 55.988 kb on + strand, within GFF1670 at 55.989 kb on - strand, within GFF1670 at 55.989 kb on - strand, within GFF1670 at 56.032 kb on + strand, within GFF1670 at 56.278 kb on - strand, within GFF1670 at 56.614 kb on - strand at 56.809 kb on - strand, within GFF1671 at 56.813 kb on - strand, within GFF1671 at 56.813 kb on - strand, within GFF1671 at 56.813 kb on - strand, within GFF1671 at 57.016 kb on - strand, within GFF1671 at 57.210 kb on - strand, within GFF1671 at 57.210 kb on - strand, within GFF1671 at 57.213 kb on + strand, within GFF1671 at 57.214 kb on - strand, within GFF1671 at 57.347 kb on + strand at 57.426 kb on + strand at 57.427 kb on - strand at 57.457 kb on - strand at 57.635 kb on + strand, within GFF1672 at 57.635 kb on + strand, within GFF1672 at 57.725 kb on - strand, within GFF1672 at 57.831 kb on + strand, within GFF1672 at 57.944 kb on - strand, within GFF1672 at 58.136 kb on + strand at 58.136 kb on + strand at 58.200 kb on + strand, within GFF1673 at 58.219 kb on + strand, within GFF1673
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 55,599 + -0.8 55,600 - +0.5 55,683 - -0.2 55,683 - +0.4 55,692 - +1.0 55,751 + GFF1670 0.14 -0.1 55,768 + GFF1670 0.16 +0.3 55,768 + GFF1670 0.16 -0.6 55,839 - GFF1670 0.24 +0.2 55,922 - GFF1670 0.33 +0.2 55,988 + GFF1670 0.40 +0.0 55,989 - GFF1670 0.40 +1.1 55,989 - GFF1670 0.40 +0.4 56,032 + GFF1670 0.44 +0.0 56,278 - GFF1670 0.71 -0.4 56,614 - +0.9 56,809 - GFF1671 0.30 +1.0 56,813 - GFF1671 0.30 +0.5 56,813 - GFF1671 0.30 +0.6 56,813 - GFF1671 0.30 +0.4 57,016 - GFF1671 0.53 +1.1 57,210 - GFF1671 0.75 +0.6 57,210 - GFF1671 0.75 +0.8 57,213 + GFF1671 0.75 -0.0 57,214 - GFF1671 0.75 +0.3 57,347 + +0.7 57,426 + +1.2 57,427 - +0.4 57,457 - +0.7 57,635 + GFF1672 0.13 +0.6 57,635 + GFF1672 0.13 +0.0 57,725 - GFF1672 0.29 +0.6 57,831 + GFF1672 0.47 +0.1 57,944 - GFF1672 0.67 +0.9 58,136 + +0.2 58,136 + +0.7 58,200 + GFF1673 0.18 +0.6 58,219 + GFF1673 0.24 +0.1
Or see this region's nucleotide sequence