Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1522 and GFF1523 are separated by 110 nucleotides GFF1523 and GFF1524 are separated by 43 nucleotides
GFF1522 - Galactitol utilization operon repressor, at 26,316 to 27,089
GFF1522
GFF1523 - Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251), at 27,200 to 28,243
GFF1523
GFF1524 - PTS system, galactitol-specific IIC component (EC 2.7.1.69), at 28,287 to 29,660
GFF1524
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1 at 26.202 kb on - strand at 26.461 kb on - strand, within GFF1522 at 26.529 kb on - strand, within GFF1522 at 26.676 kb on - strand, within GFF1522 at 26.691 kb on - strand, within GFF1522 at 26.691 kb on - strand, within GFF1522 at 26.712 kb on - strand, within GFF1522 at 26.724 kb on - strand, within GFF1522 at 26.724 kb on - strand, within GFF1522 at 26.727 kb on - strand, within GFF1522 at 26.761 kb on - strand, within GFF1522 at 27.009 kb on - strand, within GFF1522 at 27.047 kb on + strand at 27.048 kb on - strand at 27.048 kb on - strand at 27.197 kb on - strand at 27.375 kb on + strand, within GFF1523 at 27.431 kb on - strand, within GFF1523 at 27.459 kb on - strand, within GFF1523 at 27.459 kb on - strand, within GFF1523 at 27.620 kb on - strand, within GFF1523 at 27.749 kb on - strand, within GFF1523 at 27.753 kb on - strand, within GFF1523 at 27.795 kb on - strand, within GFF1523 at 27.795 kb on - strand, within GFF1523 at 27.917 kb on + strand, within GFF1523 at 27.917 kb on + strand, within GFF1523 at 27.928 kb on - strand, within GFF1523 at 28.029 kb on - strand, within GFF1523 at 28.073 kb on + strand, within GFF1523 at 28.079 kb on - strand, within GFF1523 at 28.082 kb on - strand, within GFF1523 at 28.087 kb on - strand, within GFF1523 at 28.089 kb on + strand, within GFF1523 at 28.090 kb on - strand, within GFF1523 at 28.381 kb on + strand at 28.381 kb on + strand at 28.386 kb on - strand at 28.386 kb on - strand at 28.386 kb on - strand at 28.425 kb on - strand, within GFF1524 at 28.689 kb on + strand, within GFF1524 at 28.692 kb on + strand, within GFF1524 at 28.692 kb on + strand, within GFF1524 at 28.692 kb on + strand, within GFF1524 at 28.725 kb on + strand, within GFF1524 at 28.815 kb on + strand, within GFF1524 at 28.815 kb on + strand, within GFF1524 at 28.860 kb on - strand, within GFF1524 at 28.868 kb on + strand, within GFF1524 at 28.883 kb on + strand, within GFF1524 at 29.042 kb on + strand, within GFF1524 at 29.076 kb on - strand, within GFF1524 at 29.149 kb on + strand, within GFF1524
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 26,202 - +0.1 26,461 - GFF1522 0.19 +0.2 26,529 - GFF1522 0.28 -0.0 26,676 - GFF1522 0.47 +0.3 26,691 - GFF1522 0.48 +0.0 26,691 - GFF1522 0.48 -0.1 26,712 - GFF1522 0.51 +0.8 26,724 - GFF1522 0.53 +0.8 26,724 - GFF1522 0.53 +0.4 26,727 - GFF1522 0.53 -0.3 26,761 - GFF1522 0.57 -0.1 27,009 - GFF1522 0.90 +0.2 27,047 + +0.2 27,048 - +0.9 27,048 - +0.1 27,197 - +0.0 27,375 + GFF1523 0.17 -0.2 27,431 - GFF1523 0.22 -1.4 27,459 - GFF1523 0.25 -1.0 27,459 - GFF1523 0.25 -0.1 27,620 - GFF1523 0.40 -0.5 27,749 - GFF1523 0.53 +0.3 27,753 - GFF1523 0.53 -0.4 27,795 - GFF1523 0.57 -0.4 27,795 - GFF1523 0.57 +1.5 27,917 + GFF1523 0.69 +0.3 27,917 + GFF1523 0.69 +0.4 27,928 - GFF1523 0.70 +0.1 28,029 - GFF1523 0.79 +0.7 28,073 + GFF1523 0.84 +0.9 28,079 - GFF1523 0.84 -2.2 28,082 - GFF1523 0.84 +0.2 28,087 - GFF1523 0.85 +0.4 28,089 + GFF1523 0.85 +0.8 28,090 - GFF1523 0.85 +0.7 28,381 + +0.1 28,381 + +0.1 28,386 - +0.8 28,386 - -0.2 28,386 - +0.1 28,425 - GFF1524 0.10 +0.4 28,689 + GFF1524 0.29 -0.1 28,692 + GFF1524 0.29 -0.6 28,692 + GFF1524 0.29 +0.8 28,692 + GFF1524 0.29 -0.7 28,725 + GFF1524 0.32 +0.4 28,815 + GFF1524 0.38 -0.2 28,815 + GFF1524 0.38 +0.6 28,860 - GFF1524 0.42 +0.6 28,868 + GFF1524 0.42 +0.1 28,883 + GFF1524 0.43 +0.6 29,042 + GFF1524 0.55 -0.1 29,076 - GFF1524 0.57 +0.1 29,149 + GFF1524 0.63 -0.2
Or see this region's nucleotide sequence