Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF131

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF130 and GFF131 are separated by 221 nucleotidesGFF131 and GFF132 are separated by 9 nucleotides GFF130 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 119,824 to 120,717 GFF130 GFF131 - Type IV pilin PilA, at 120,939 to 121,376 GFF131 GFF132 - Type IV fimbrial assembly, ATPase PilB, at 121,386 to 122,771 GFF132 Position (kb) 120 121 122Strain fitness (log2 ratio) -1 0 1 2at 119.982 kb on + strand, within GFF130at 120.316 kb on + strand, within GFF130at 120.391 kb on - strand, within GFF130at 120.440 kb on + strand, within GFF130at 120.516 kb on + strand, within GFF130at 120.753 kb on - strandat 120.753 kb on - strandat 120.784 kb on - strandat 120.790 kb on + strandat 120.833 kb on - strandat 121.035 kb on + strand, within GFF131at 121.036 kb on - strand, within GFF131at 121.061 kb on + strand, within GFF131at 121.062 kb on - strand, within GFF131at 121.088 kb on + strand, within GFF131at 121.180 kb on - strand, within GFF131at 121.221 kb on - strand, within GFF131at 121.305 kb on - strand, within GFF131at 121.432 kb on + strandat 121.651 kb on + strand, within GFF132at 121.745 kb on + strand, within GFF132at 121.854 kb on - strand, within GFF132at 121.908 kb on - strand, within GFF132at 121.908 kb on - strand, within GFF132at 121.983 kb on + strand, within GFF132at 121.983 kb on + strand, within GFF132at 121.984 kb on - strand, within GFF132at 121.984 kb on - strand, within GFF132at 121.984 kb on - strand, within GFF132at 122.007 kb on - strand, within GFF132at 122.126 kb on + strand, within GFF132at 122.127 kb on - strand, within GFF132at 122.254 kb on + strand, within GFF132at 122.255 kb on - strand, within GFF132at 122.321 kb on - strand, within GFF132at 122.337 kb on - strand, within GFF132at 122.362 kb on + strand, within GFF132at 122.362 kb on + strand, within GFF132

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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119,982 + GFF130 0.18 +0.9
120,316 + GFF130 0.55 +0.3
120,391 - GFF130 0.63 +0.0
120,440 + GFF130 0.69 -0.2
120,516 + GFF130 0.77 +0.1
120,753 - -0.3
120,753 - +0.1
120,784 - +2.1
120,790 + +0.1
120,833 - -0.5
121,035 + GFF131 0.22 +0.4
121,036 - GFF131 0.22 +0.2
121,061 + GFF131 0.28 +0.1
121,062 - GFF131 0.28 +0.4
121,088 + GFF131 0.34 +0.1
121,180 - GFF131 0.55 +0.1
121,221 - GFF131 0.64 +0.4
121,305 - GFF131 0.84 +0.5
121,432 + -0.1
121,651 + GFF132 0.19 +0.5
121,745 + GFF132 0.26 -0.2
121,854 - GFF132 0.34 +0.7
121,908 - GFF132 0.38 -0.1
121,908 - GFF132 0.38 -0.2
121,983 + GFF132 0.43 +0.0
121,983 + GFF132 0.43 -0.1
121,984 - GFF132 0.43 -0.6
121,984 - GFF132 0.43 +0.4
121,984 - GFF132 0.43 -0.2
122,007 - GFF132 0.45 +0.0
122,126 + GFF132 0.53 +0.2
122,127 - GFF132 0.53 +0.6
122,254 + GFF132 0.63 -0.0
122,255 - GFF132 0.63 +0.1
122,321 - GFF132 0.67 +0.1
122,337 - GFF132 0.69 +1.1
122,362 + GFF132 0.70 +0.2
122,362 + GFF132 0.70 +0.3

Or see this region's nucleotide sequence