Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1215

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1213 and GFF1214 are separated by 27 nucleotidesGFF1214 and GFF1215 are separated by 274 nucleotidesGFF1215 and GFF1216 are separated by 890 nucleotides GFF1213 - hypothetical protein, at 53,648 to 53,764 GFF1213 GFF1214 - Kappa-fimbriae major subunit, at 53,792 to 54,310 GFF1214 GFF1215 - Kappa-fimbriae regulatory protein, at 54,585 to 54,887 GFF1215 GFF1216 - protein YgiW precursor, at 55,778 to 55,987 GFF1216 Position (kb) 54 55Strain fitness (log2 ratio) -1 0 1at 53.969 kb on + strand, within GFF1214at 53.983 kb on + strand, within GFF1214at 53.983 kb on + strand, within GFF1214at 54.284 kb on - strandat 54.676 kb on + strand, within GFF1215at 54.719 kb on - strand, within GFF1215at 54.764 kb on + strand, within GFF1215at 55.271 kb on + strandat 55.425 kb on + strandat 55.715 kb on - strandat 55.799 kb on - strand, within GFF1216at 55.854 kb on - strand, within GFF1216

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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53,969 + GFF1214 0.34 +0.4
53,983 + GFF1214 0.37 +0.1
53,983 + GFF1214 0.37 +0.1
54,284 - -0.4
54,676 + GFF1215 0.30 +0.6
54,719 - GFF1215 0.44 +0.4
54,764 + GFF1215 0.59 -0.0
55,271 + -0.8
55,425 + -0.4
55,715 - -0.3
55,799 - GFF1216 0.10 +0.8
55,854 - GFF1216 0.36 +0.4

Or see this region's nucleotide sequence