Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1188 and GFF1189 are separated by 19 nucleotides GFF1189 and GFF1190 are separated by 54 nucleotides GFF1190 and GFF1191 are separated by 114 nucleotides
GFF1188 - IncF plasmid conjugative transfer DNA-nicking and unwinding protein TraI, at 33,566 to 38,824
GFF1188
GFF1189 - IncF plasmid conjugative transfer pilin acetylase TraX, at 38,844 to 39,584
GFF1189
GFF1190 - IncF plasmid conjugative transfer fertility inhibition protein FinO, at 39,639 to 40,202
GFF1190
GFF1191 - putative cytoplasmic protein, at 40,317 to 40,601
GFF1191
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1 at 37.850 kb on + strand, within GFF1188 at 37.850 kb on + strand, within GFF1188 at 37.851 kb on - strand, within GFF1188 at 37.851 kb on - strand, within GFF1188 at 38.117 kb on + strand, within GFF1188 at 38.129 kb on + strand, within GFF1188 at 38.130 kb on - strand, within GFF1188 at 38.130 kb on - strand, within GFF1188 at 38.130 kb on - strand, within GFF1188 at 38.173 kb on + strand, within GFF1188 at 38.311 kb on + strand at 38.867 kb on + strand at 38.868 kb on - strand at 38.985 kb on - strand, within GFF1189 at 39.083 kb on + strand, within GFF1189 at 39.083 kb on + strand, within GFF1189 at 39.084 kb on - strand, within GFF1189 at 39.084 kb on - strand, within GFF1189 at 39.171 kb on + strand, within GFF1189 at 39.266 kb on - strand, within GFF1189 at 39.349 kb on - strand, within GFF1189 at 39.475 kb on + strand, within GFF1189 at 39.543 kb on + strand at 39.543 kb on + strand at 39.633 kb on + strand at 39.633 kb on + strand at 39.633 kb on + strand at 39.633 kb on + strand at 39.633 kb on + strand at 39.633 kb on + strand at 39.723 kb on - strand, within GFF1190 at 39.723 kb on - strand, within GFF1190 at 39.997 kb on + strand, within GFF1190 at 40.035 kb on + strand, within GFF1190 at 40.035 kb on + strand, within GFF1190 at 40.069 kb on - strand, within GFF1190 at 40.084 kb on - strand, within GFF1190 at 40.084 kb on - strand, within GFF1190 at 40.097 kb on + strand, within GFF1190 at 40.097 kb on + strand, within GFF1190 at 40.097 kb on + strand, within GFF1190 at 40.097 kb on + strand, within GFF1190 at 40.100 kb on + strand, within GFF1190 at 40.120 kb on - strand, within GFF1190 at 40.218 kb on + strand at 40.219 kb on - strand at 40.219 kb on - strand at 40.220 kb on + strand at 40.220 kb on + strand at 40.314 kb on + strand at 40.322 kb on + strand at 40.322 kb on + strand at 40.323 kb on - strand at 40.323 kb on - strand at 40.323 kb on - strand at 40.342 kb on + strand at 40.455 kb on + strand, within GFF1191 at 40.455 kb on + strand, within GFF1191 at 40.552 kb on + strand, within GFF1191 at 40.552 kb on + strand, within GFF1191 at 40.580 kb on + strand at 40.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 37,850 + GFF1188 0.81 -0.8 37,850 + GFF1188 0.81 -0.2 37,851 - GFF1188 0.81 +0.1 37,851 - GFF1188 0.81 +0.3 38,117 + GFF1188 0.87 -0.3 38,129 + GFF1188 0.87 -0.1 38,130 - GFF1188 0.87 +0.1 38,130 - GFF1188 0.87 +0.7 38,130 - GFF1188 0.87 +0.1 38,173 + GFF1188 0.88 -0.7 38,311 + +1.2 38,867 + +1.0 38,868 - +0.0 38,985 - GFF1189 0.19 +0.0 39,083 + GFF1189 0.32 +0.4 39,083 + GFF1189 0.32 +0.4 39,084 - GFF1189 0.32 -0.4 39,084 - GFF1189 0.32 +0.8 39,171 + GFF1189 0.44 +0.1 39,266 - GFF1189 0.57 +0.1 39,349 - GFF1189 0.68 +0.5 39,475 + GFF1189 0.85 +0.9 39,543 + +0.2 39,543 + +0.3 39,633 + +0.5 39,633 + -0.0 39,633 + +1.1 39,633 + -0.4 39,633 + +0.2 39,633 + +0.4 39,723 - GFF1190 0.15 -0.4 39,723 - GFF1190 0.15 -0.0 39,997 + GFF1190 0.63 +0.7 40,035 + GFF1190 0.70 +0.2 40,035 + GFF1190 0.70 -0.0 40,069 - GFF1190 0.76 -0.1 40,084 - GFF1190 0.79 +1.1 40,084 - GFF1190 0.79 +0.0 40,097 + GFF1190 0.81 +0.5 40,097 + GFF1190 0.81 +0.1 40,097 + GFF1190 0.81 +0.0 40,097 + GFF1190 0.81 +0.0 40,100 + GFF1190 0.82 -0.3 40,120 - GFF1190 0.85 +0.2 40,218 + +0.6 40,219 - -0.1 40,219 - +0.0 40,220 + +0.3 40,220 + +1.6 40,314 + -0.6 40,322 + +0.6 40,322 + +0.0 40,323 - +0.2 40,323 - +1.6 40,323 - +0.4 40,342 + +0.2 40,455 + GFF1191 0.48 +0.8 40,455 + GFF1191 0.48 -1.0 40,552 + GFF1191 0.82 -1.0 40,552 + GFF1191 0.82 -0.1 40,580 + -1.4 40,581 - -0.6
Or see this region's nucleotide sequence