Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1168

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1167 and GFF1168 are separated by 55 nucleotidesGFF1168 and GFF1169 are separated by 41 nucleotidesGFF1169 and GFF1170 overlap by 4 nucleotides GFF1167 - IncF plasmid conjugative transfer pilus assembly protein TraC, at 14,877 to 17,525 GFF1167 GFF1168 - IncF plasmid conjugative transfer protein TrbI, at 17,581 to 17,886 GFF1168 GFF1169 - IncF plasmid conjugative transfer pilus assembly protein TraW, at 17,928 to 18,515 GFF1169 GFF1170 - IncF plasmid conjugative transfer pilus assembly protein TraU, at 18,512 to 19,504 GFF1170 Position (kb) 17 18Strain fitness (log2 ratio) -1 0 1at 16.653 kb on - strand, within GFF1167at 16.788 kb on + strand, within GFF1167at 16.788 kb on + strand, within GFF1167at 16.901 kb on + strand, within GFF1167at 16.906 kb on - strand, within GFF1167at 16.923 kb on + strand, within GFF1167at 17.025 kb on + strand, within GFF1167at 17.056 kb on - strand, within GFF1167at 17.057 kb on + strand, within GFF1167at 17.058 kb on - strand, within GFF1167at 17.076 kb on - strand, within GFF1167at 17.129 kb on + strand, within GFF1167at 17.130 kb on - strand, within GFF1167at 17.340 kb on + strandat 17.341 kb on - strandat 17.371 kb on + strandat 17.372 kb on - strandat 17.372 kb on - strandat 17.372 kb on - strandat 17.499 kb on + strandat 17.500 kb on - strandat 17.500 kb on - strandat 17.505 kb on + strandat 17.506 kb on - strandat 17.588 kb on + strandat 17.609 kb on - strandat 17.739 kb on + strand, within GFF1168at 17.868 kb on + strandat 17.869 kb on - strandat 18.231 kb on + strand, within GFF1169at 18.231 kb on + strand, within GFF1169at 18.231 kb on + strand, within GFF1169at 18.232 kb on - strand, within GFF1169at 18.255 kb on + strand, within GFF1169at 18.333 kb on - strand, within GFF1169at 18.537 kb on + strandat 18.658 kb on + strand, within GFF1170at 18.659 kb on - strand, within GFF1170at 18.659 kb on - strand, within GFF1170

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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16,653 - GFF1167 0.67 -0.2
16,788 + GFF1167 0.72 +0.6
16,788 + GFF1167 0.72 -0.7
16,901 + GFF1167 0.76 -0.0
16,906 - GFF1167 0.77 +1.4
16,923 + GFF1167 0.77 -0.4
17,025 + GFF1167 0.81 +0.1
17,056 - GFF1167 0.82 -0.3
17,057 + GFF1167 0.82 +0.2
17,058 - GFF1167 0.82 -0.1
17,076 - GFF1167 0.83 +0.1
17,129 + GFF1167 0.85 -0.4
17,130 - GFF1167 0.85 +0.8
17,340 + +0.6
17,341 - -0.4
17,371 + -0.9
17,372 - -0.2
17,372 - -0.1
17,372 - +0.2
17,499 + +0.4
17,500 - -0.4
17,500 - +0.3
17,505 + -0.4
17,506 - -0.1
17,588 + +0.1
17,609 - -0.7
17,739 + GFF1168 0.52 -0.6
17,868 + -0.2
17,869 - +0.6
18,231 + GFF1169 0.52 +0.3
18,231 + GFF1169 0.52 +0.2
18,231 + GFF1169 0.52 -0.2
18,232 - GFF1169 0.52 -0.1
18,255 + GFF1169 0.56 -0.1
18,333 - GFF1169 0.69 +0.1
18,537 + -0.2
18,658 + GFF1170 0.15 +0.2
18,659 - GFF1170 0.15 +0.4
18,659 - GFF1170 0.15 +0.1

Or see this region's nucleotide sequence