Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4639 and Echvi_4640 are separated by 38 nucleotides Echvi_4640 and Echvi_4641 are separated by 375 nucleotides Echvi_4641 and Echvi_4642 are separated by 5 nucleotides Echvi_4642 and Echvi_4643 are separated by 152 nucleotides
Echvi_4639: Echvi_4639 - TonB-linked outer membrane protein, SusC/RagA family, at 5,549,994 to 5,553,200
_4639
Echvi_4640: Echvi_4640 - hypothetical protein, at 5,553,239 to 5,553,331
_4640
Echvi_4641: Echvi_4641 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 5,553,707 to 5,555,617
_4641
Echvi_4642: Echvi_4642 - Organic radical activating enzymes, at 5,555,623 to 5,556,249
_4642
Echvi_4643: Echvi_4643 - 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase, at 5,556,402 to 5,557,286
_4643
Position (kb) 5553
5554
5555
5556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5552.741 kb on + strand, within Echvi_4639 at 5552.754 kb on + strand, within Echvi_4639 at 5552.763 kb on + strand, within Echvi_4639 at 5552.763 kb on + strand, within Echvi_4639 at 5552.764 kb on - strand, within Echvi_4639 at 5552.796 kb on + strand, within Echvi_4639 at 5552.796 kb on + strand, within Echvi_4639 at 5552.796 kb on + strand, within Echvi_4639 at 5552.796 kb on + strand, within Echvi_4639 at 5552.804 kb on + strand, within Echvi_4639 at 5552.805 kb on - strand, within Echvi_4639 at 5552.805 kb on - strand, within Echvi_4639 at 5552.827 kb on - strand, within Echvi_4639 at 5552.858 kb on + strand, within Echvi_4639 at 5552.858 kb on + strand, within Echvi_4639 at 5552.858 kb on + strand, within Echvi_4639 at 5552.859 kb on - strand, within Echvi_4639 at 5552.859 kb on - strand, within Echvi_4639 at 5552.861 kb on + strand, within Echvi_4639 at 5552.862 kb on - strand, within Echvi_4639 at 5552.867 kb on + strand, within Echvi_4639 at 5552.868 kb on - strand, within Echvi_4639 at 5552.868 kb on - strand, within Echvi_4639 at 5553.022 kb on + strand at 5553.023 kb on - strand at 5553.057 kb on - strand at 5553.057 kb on - strand at 5553.113 kb on + strand at 5553.114 kb on - strand at 5553.165 kb on + strand at 5553.200 kb on + strand at 5553.220 kb on - strand at 5553.234 kb on - strand at 5553.234 kb on - strand at 5553.262 kb on - strand, within Echvi_4640 at 5553.399 kb on + strand at 5553.533 kb on + strand at 5553.536 kb on + strand at 5553.538 kb on + strand at 5553.538 kb on + strand at 5553.609 kb on - strand at 5553.611 kb on + strand at 5553.613 kb on + strand at 5553.613 kb on + strand at 5553.708 kb on + strand at 5553.818 kb on + strand at 5553.819 kb on - strand at 5553.830 kb on + strand at 5553.833 kb on + strand at 5553.834 kb on - strand at 5553.837 kb on + strand at 5553.881 kb on - strand at 5553.881 kb on - strand at 5553.882 kb on + strand at 5553.883 kb on - strand at 5553.902 kb on - strand, within Echvi_4641 at 5553.907 kb on + strand, within Echvi_4641 at 5553.908 kb on - strand, within Echvi_4641 at 5553.908 kb on - strand, within Echvi_4641 at 5553.925 kb on + strand, within Echvi_4641 at 5553.992 kb on + strand, within Echvi_4641 at 5554.067 kb on + strand, within Echvi_4641 at 5554.091 kb on + strand, within Echvi_4641 at 5554.146 kb on + strand, within Echvi_4641 at 5554.146 kb on + strand, within Echvi_4641 at 5554.146 kb on + strand, within Echvi_4641 at 5554.147 kb on - strand, within Echvi_4641 at 5554.147 kb on - strand, within Echvi_4641 at 5554.147 kb on - strand, within Echvi_4641 at 5554.147 kb on - strand, within Echvi_4641 at 5554.173 kb on + strand, within Echvi_4641 at 5554.184 kb on - strand, within Echvi_4641 at 5554.184 kb on - strand, within Echvi_4641 at 5554.226 kb on - strand, within Echvi_4641 at 5554.226 kb on - strand, within Echvi_4641 at 5554.226 kb on - strand, within Echvi_4641 at 5554.363 kb on - strand, within Echvi_4641 at 5554.363 kb on - strand, within Echvi_4641 at 5554.363 kb on - strand, within Echvi_4641 at 5554.403 kb on - strand, within Echvi_4641 at 5554.405 kb on - strand, within Echvi_4641 at 5554.407 kb on + strand, within Echvi_4641 at 5554.407 kb on + strand, within Echvi_4641 at 5554.407 kb on + strand, within Echvi_4641 at 5554.408 kb on - strand, within Echvi_4641 at 5554.408 kb on - strand, within Echvi_4641 at 5554.408 kb on - strand, within Echvi_4641 at 5554.463 kb on - strand, within Echvi_4641 at 5554.546 kb on + strand, within Echvi_4641 at 5554.547 kb on - strand, within Echvi_4641 at 5554.569 kb on - strand, within Echvi_4641 at 5554.569 kb on - strand, within Echvi_4641 at 5554.583 kb on - strand, within Echvi_4641 at 5554.688 kb on - strand, within Echvi_4641 at 5554.831 kb on + strand, within Echvi_4641 at 5554.831 kb on + strand, within Echvi_4641 at 5554.831 kb on + strand, within Echvi_4641 at 5554.834 kb on - strand, within Echvi_4641 at 5554.834 kb on - strand, within Echvi_4641 at 5554.834 kb on - strand, within Echvi_4641 at 5554.842 kb on + strand, within Echvi_4641 at 5554.842 kb on + strand, within Echvi_4641 at 5554.842 kb on + strand, within Echvi_4641 at 5554.842 kb on + strand, within Echvi_4641 at 5554.843 kb on - strand, within Echvi_4641 at 5554.843 kb on - strand, within Echvi_4641 at 5554.844 kb on + strand, within Echvi_4641 at 5554.844 kb on + strand, within Echvi_4641 at 5554.845 kb on - strand, within Echvi_4641 at 5554.845 kb on - strand, within Echvi_4641 at 5554.885 kb on + strand, within Echvi_4641 at 5554.887 kb on + strand, within Echvi_4641 at 5554.887 kb on + strand, within Echvi_4641 at 5554.919 kb on - strand, within Echvi_4641 at 5554.924 kb on + strand, within Echvi_4641 at 5554.924 kb on + strand, within Echvi_4641 at 5554.925 kb on - strand, within Echvi_4641 at 5554.925 kb on - strand, within Echvi_4641 at 5555.002 kb on + strand, within Echvi_4641 at 5555.048 kb on - strand, within Echvi_4641 at 5555.108 kb on + strand, within Echvi_4641 at 5555.213 kb on + strand, within Echvi_4641 at 5555.213 kb on + strand, within Echvi_4641 at 5555.213 kb on + strand, within Echvi_4641 at 5555.214 kb on - strand, within Echvi_4641 at 5555.287 kb on - strand, within Echvi_4641 at 5555.287 kb on - strand, within Echvi_4641 at 5555.288 kb on + strand, within Echvi_4641 at 5555.288 kb on + strand, within Echvi_4641 at 5555.288 kb on + strand, within Echvi_4641 at 5555.289 kb on - strand, within Echvi_4641 at 5555.289 kb on - strand, within Echvi_4641 at 5555.290 kb on + strand, within Echvi_4641 at 5555.290 kb on + strand, within Echvi_4641 at 5555.290 kb on + strand, within Echvi_4641 at 5555.290 kb on + strand, within Echvi_4641 at 5555.290 kb on + strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.301 kb on - strand, within Echvi_4641 at 5555.309 kb on - strand, within Echvi_4641 at 5555.364 kb on - strand, within Echvi_4641 at 5555.396 kb on - strand, within Echvi_4641 at 5555.402 kb on + strand, within Echvi_4641 at 5555.402 kb on + strand, within Echvi_4641 at 5555.402 kb on + strand, within Echvi_4641 at 5555.422 kb on - strand, within Echvi_4641 at 5555.464 kb on - strand at 5555.522 kb on + strand at 5555.522 kb on + strand at 5555.522 kb on + strand at 5555.522 kb on + strand at 5555.522 kb on + strand at 5555.523 kb on - strand at 5555.523 kb on - strand at 5555.540 kb on - strand at 5555.551 kb on + strand at 5555.553 kb on + strand at 5555.554 kb on - strand at 5555.554 kb on - strand at 5555.554 kb on - strand at 5555.600 kb on + strand at 5555.624 kb on + strand at 5555.638 kb on - strand at 5555.706 kb on + strand, within Echvi_4642 at 5555.707 kb on - strand, within Echvi_4642 at 5555.820 kb on + strand, within Echvi_4642 at 5555.820 kb on + strand, within Echvi_4642 at 5555.821 kb on - strand, within Echvi_4642 at 5555.977 kb on + strand, within Echvi_4642 at 5555.985 kb on - strand, within Echvi_4642 at 5555.985 kb on - strand, within Echvi_4642 at 5556.030 kb on - strand, within Echvi_4642 at 5556.112 kb on + strand, within Echvi_4642 at 5556.113 kb on - strand, within Echvi_4642 at 5556.113 kb on - strand, within Echvi_4642 at 5556.136 kb on + strand, within Echvi_4642 at 5556.192 kb on - strand at 5556.250 kb on - strand at 5556.252 kb on + strand at 5556.254 kb on + strand at 5556.266 kb on + strand at 5556.289 kb on - strand at 5556.351 kb on + strand at 5556.351 kb on + strand at 5556.351 kb on + strand at 5556.362 kb on - strand at 5556.362 kb on - strand at 5556.409 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 5,552,741 + Echvi_4639 0.86 -1.1 5,552,754 + Echvi_4639 0.86 -0.3 5,552,763 + Echvi_4639 0.86 -1.6 5,552,763 + Echvi_4639 0.86 +0.5 5,552,764 - Echvi_4639 0.86 -0.8 5,552,796 + Echvi_4639 0.87 +0.8 5,552,796 + Echvi_4639 0.87 -0.2 5,552,796 + Echvi_4639 0.87 -2.9 5,552,796 + Echvi_4639 0.87 -1.1 5,552,804 + Echvi_4639 0.88 -1.2 5,552,805 - Echvi_4639 0.88 -0.6 5,552,805 - Echvi_4639 0.88 +0.6 5,552,827 - Echvi_4639 0.88 -0.3 5,552,858 + Echvi_4639 0.89 +1.6 5,552,858 + Echvi_4639 0.89 +1.1 5,552,858 + Echvi_4639 0.89 -0.4 5,552,859 - Echvi_4639 0.89 +3.7 5,552,859 - Echvi_4639 0.89 -0.6 5,552,861 + Echvi_4639 0.89 -0.3 5,552,862 - Echvi_4639 0.89 -1.0 5,552,867 + Echvi_4639 0.90 +1.5 5,552,868 - Echvi_4639 0.90 +0.1 5,552,868 - Echvi_4639 0.90 +0.7 5,553,022 + -0.5 5,553,023 - -1.5 5,553,057 - -1.1 5,553,057 - +0.8 5,553,113 + -1.7 5,553,114 - +0.2 5,553,165 + -0.5 5,553,200 + -0.7 5,553,220 - +1.4 5,553,234 - +1.0 5,553,234 - +0.3 5,553,262 - Echvi_4640 0.25 +0.6 5,553,399 + -0.9 5,553,533 + +0.8 5,553,536 + -2.1 5,553,538 + +1.3 5,553,538 + +0.6 5,553,609 - -0.4 5,553,611 + -0.7 5,553,613 + -0.4 5,553,613 + +1.3 5,553,708 + -1.4 5,553,818 + -0.5 5,553,819 - +0.8 5,553,830 + -0.4 5,553,833 + -0.5 5,553,834 - +0.8 5,553,837 + -0.6 5,553,881 - -0.1 5,553,881 - +0.1 5,553,882 + -1.3 5,553,883 - +1.4 5,553,902 - Echvi_4641 0.10 +1.1 5,553,907 + Echvi_4641 0.10 -0.1 5,553,908 - Echvi_4641 0.11 -0.4 5,553,908 - Echvi_4641 0.11 -0.5 5,553,925 + Echvi_4641 0.11 -0.4 5,553,992 + Echvi_4641 0.15 +0.0 5,554,067 + Echvi_4641 0.19 -0.6 5,554,091 + Echvi_4641 0.20 -1.3 5,554,146 + Echvi_4641 0.23 -0.5 5,554,146 + Echvi_4641 0.23 -0.5 5,554,146 + Echvi_4641 0.23 +2.2 5,554,147 - Echvi_4641 0.23 +2.3 5,554,147 - Echvi_4641 0.23 -1.2 5,554,147 - Echvi_4641 0.23 -0.7 5,554,147 - Echvi_4641 0.23 +1.4 5,554,173 + Echvi_4641 0.24 -0.6 5,554,184 - Echvi_4641 0.25 +1.8 5,554,184 - Echvi_4641 0.25 +0.5 5,554,226 - Echvi_4641 0.27 +1.0 5,554,226 - Echvi_4641 0.27 +0.3 5,554,226 - Echvi_4641 0.27 -1.6 5,554,363 - Echvi_4641 0.34 +0.9 5,554,363 - Echvi_4641 0.34 -0.3 5,554,363 - Echvi_4641 0.34 -0.4 5,554,403 - Echvi_4641 0.36 +0.4 5,554,405 - Echvi_4641 0.37 +0.2 5,554,407 + Echvi_4641 0.37 -0.6 5,554,407 + Echvi_4641 0.37 -0.2 5,554,407 + Echvi_4641 0.37 -0.2 5,554,408 - Echvi_4641 0.37 -1.2 5,554,408 - Echvi_4641 0.37 +0.3 5,554,408 - Echvi_4641 0.37 +0.4 5,554,463 - Echvi_4641 0.40 -0.3 5,554,546 + Echvi_4641 0.44 -1.6 5,554,547 - Echvi_4641 0.44 +1.2 5,554,569 - Echvi_4641 0.45 +0.7 5,554,569 - Echvi_4641 0.45 +0.8 5,554,583 - Echvi_4641 0.46 +0.7 5,554,688 - Echvi_4641 0.51 -0.2 5,554,831 + Echvi_4641 0.59 -0.4 5,554,831 + Echvi_4641 0.59 +0.7 5,554,831 + Echvi_4641 0.59 +0.2 5,554,834 - Echvi_4641 0.59 +0.2 5,554,834 - Echvi_4641 0.59 +0.1 5,554,834 - Echvi_4641 0.59 -0.3 5,554,842 + Echvi_4641 0.59 -1.1 5,554,842 + Echvi_4641 0.59 +0.3 5,554,842 + Echvi_4641 0.59 -1.7 5,554,842 + Echvi_4641 0.59 -1.0 5,554,843 - Echvi_4641 0.59 -1.0 5,554,843 - Echvi_4641 0.59 +0.5 5,554,844 + Echvi_4641 0.59 -1.6 5,554,844 + Echvi_4641 0.59 -0.2 5,554,845 - Echvi_4641 0.60 +1.0 5,554,845 - Echvi_4641 0.60 +1.4 5,554,885 + Echvi_4641 0.62 -0.5 5,554,887 + Echvi_4641 0.62 +0.1 5,554,887 + Echvi_4641 0.62 +2.4 5,554,919 - Echvi_4641 0.63 +0.3 5,554,924 + Echvi_4641 0.64 -0.3 5,554,924 + Echvi_4641 0.64 +0.0 5,554,925 - Echvi_4641 0.64 -0.9 5,554,925 - Echvi_4641 0.64 +0.5 5,555,002 + Echvi_4641 0.68 -0.5 5,555,048 - Echvi_4641 0.70 +0.1 5,555,108 + Echvi_4641 0.73 -0.9 5,555,213 + Echvi_4641 0.79 +0.8 5,555,213 + Echvi_4641 0.79 -0.7 5,555,213 + Echvi_4641 0.79 +0.1 5,555,214 - Echvi_4641 0.79 +0.3 5,555,287 - Echvi_4641 0.83 +0.9 5,555,287 - Echvi_4641 0.83 +0.5 5,555,288 + Echvi_4641 0.83 -1.1 5,555,288 + Echvi_4641 0.83 -0.7 5,555,288 + Echvi_4641 0.83 -0.2 5,555,289 - Echvi_4641 0.83 +0.2 5,555,289 - Echvi_4641 0.83 -0.1 5,555,290 + Echvi_4641 0.83 -1.1 5,555,290 + Echvi_4641 0.83 +0.6 5,555,290 + Echvi_4641 0.83 -0.1 5,555,290 + Echvi_4641 0.83 +0.3 5,555,290 + Echvi_4641 0.83 +0.8 5,555,291 - Echvi_4641 0.83 +0.2 5,555,291 - Echvi_4641 0.83 +1.0 5,555,291 - Echvi_4641 0.83 -0.7 5,555,291 - Echvi_4641 0.83 -0.7 5,555,291 - Echvi_4641 0.83 +0.1 5,555,291 - Echvi_4641 0.83 -0.6 5,555,291 - Echvi_4641 0.83 +0.7 5,555,301 - Echvi_4641 0.83 -2.2 5,555,309 - Echvi_4641 0.84 -1.6 5,555,364 - Echvi_4641 0.87 -0.3 5,555,396 - Echvi_4641 0.88 +0.5 5,555,402 + Echvi_4641 0.89 +0.5 5,555,402 + Echvi_4641 0.89 -0.2 5,555,402 + Echvi_4641 0.89 -0.7 5,555,422 - Echvi_4641 0.90 +2.1 5,555,464 - -0.6 5,555,522 + -1.2 5,555,522 + +1.0 5,555,522 + +0.1 5,555,522 + +0.3 5,555,522 + -0.1 5,555,523 - +0.5 5,555,523 - -0.4 5,555,540 - -1.2 5,555,551 + -1.1 5,555,553 + +1.8 5,555,554 - +0.8 5,555,554 - +0.1 5,555,554 - +0.0 5,555,600 + +0.2 5,555,624 + -0.9 5,555,638 - -2.2 5,555,706 + Echvi_4642 0.13 +0.1 5,555,707 - Echvi_4642 0.13 +1.1 5,555,820 + Echvi_4642 0.31 -0.7 5,555,820 + Echvi_4642 0.31 +0.8 5,555,821 - Echvi_4642 0.32 +1.0 5,555,977 + Echvi_4642 0.56 +0.1 5,555,985 - Echvi_4642 0.58 +0.2 5,555,985 - Echvi_4642 0.58 -2.1 5,556,030 - Echvi_4642 0.65 +0.8 5,556,112 + Echvi_4642 0.78 -0.2 5,556,113 - Echvi_4642 0.78 +1.2 5,556,113 - Echvi_4642 0.78 +3.1 5,556,136 + Echvi_4642 0.82 +1.3 5,556,192 - +1.2 5,556,250 - -0.4 5,556,252 + +1.1 5,556,254 + +0.5 5,556,266 + +0.0 5,556,289 - +1.4 5,556,351 + -0.3 5,556,351 + -0.1 5,556,351 + +0.3 5,556,362 - +0.7 5,556,362 - +1.7 5,556,409 + -0.3
Or see this region's nucleotide sequence