Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4587

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4585 and Echvi_4586 overlap by 8 nucleotidesEchvi_4586 and Echvi_4587 overlap by 14 nucleotidesEchvi_4587 and Echvi_4588 overlap by 4 nucleotidesEchvi_4588 and Echvi_4589 are separated by 9 nucleotides Echvi_4585: Echvi_4585 - Mg-chelatase subunit ChlD, at 5,492,084 to 5,493,808 _4585 Echvi_4586: Echvi_4586 - von Willebrand factor type A domain., at 5,493,801 to 5,494,808 _4586 Echvi_4587: Echvi_4587 - hypothetical protein, at 5,494,795 to 5,495,298 _4587 Echvi_4588: Echvi_4588 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 5,495,295 to 5,496,233 _4588 Echvi_4589: Echvi_4589 - MoxR-like ATPases, at 5,496,243 to 5,497,169 _4589 Position (kb) 5494 5495 5496Strain fitness (log2 ratio) -2 -1 0 1 2at 5493.808 kb on + strandat 5493.809 kb on - strandat 5493.809 kb on - strandat 5493.809 kb on - strandat 5493.901 kb on + strandat 5493.902 kb on - strand, within Echvi_4586at 5493.907 kb on + strand, within Echvi_4586at 5493.907 kb on + strand, within Echvi_4586at 5493.974 kb on + strand, within Echvi_4586at 5493.976 kb on + strand, within Echvi_4586at 5493.976 kb on + strand, within Echvi_4586at 5493.977 kb on - strand, within Echvi_4586at 5494.016 kb on - strand, within Echvi_4586at 5494.016 kb on - strand, within Echvi_4586at 5494.104 kb on - strand, within Echvi_4586at 5494.105 kb on + strand, within Echvi_4586at 5494.106 kb on - strand, within Echvi_4586at 5494.133 kb on + strand, within Echvi_4586at 5494.197 kb on + strand, within Echvi_4586at 5494.198 kb on - strand, within Echvi_4586at 5494.198 kb on - strand, within Echvi_4586at 5494.198 kb on - strand, within Echvi_4586at 5494.209 kb on - strand, within Echvi_4586at 5494.209 kb on - strand, within Echvi_4586at 5494.348 kb on + strand, within Echvi_4586at 5494.484 kb on + strand, within Echvi_4586at 5494.746 kb on + strandat 5494.797 kb on - strandat 5494.830 kb on + strandat 5494.967 kb on + strand, within Echvi_4587at 5494.967 kb on + strand, within Echvi_4587at 5494.968 kb on - strand, within Echvi_4587at 5494.968 kb on - strand, within Echvi_4587at 5494.968 kb on - strand, within Echvi_4587at 5494.995 kb on - strand, within Echvi_4587at 5495.018 kb on - strand, within Echvi_4587at 5495.094 kb on - strand, within Echvi_4587at 5495.312 kb on + strandat 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.464 kb on - strand, within Echvi_4588at 5495.464 kb on - strand, within Echvi_4588at 5495.464 kb on - strand, within Echvi_4588at 5495.464 kb on - strand, within Echvi_4588at 5495.466 kb on - strand, within Echvi_4588at 5495.466 kb on - strand, within Echvi_4588at 5495.534 kb on - strand, within Echvi_4588at 5495.558 kb on + strand, within Echvi_4588at 5495.581 kb on + strand, within Echvi_4588at 5495.603 kb on - strand, within Echvi_4588at 5495.645 kb on + strand, within Echvi_4588at 5495.652 kb on - strand, within Echvi_4588at 5495.934 kb on + strand, within Echvi_4588at 5495.982 kb on - strand, within Echvi_4588at 5496.046 kb on + strand, within Echvi_4588at 5496.047 kb on - strand, within Echvi_4588at 5496.116 kb on + strand, within Echvi_4588at 5496.164 kb on - strandat 5496.164 kb on - strandat 5496.195 kb on - strandat 5496.212 kb on - strandat 5496.234 kb on - strandat 5496.244 kb on + strandat 5496.245 kb on - strandat 5496.250 kb on - strandat 5496.252 kb on + strandat 5496.258 kb on + strandat 5496.259 kb on - strandat 5496.263 kb on + strandat 5496.264 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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5,493,808 + -2.2
5,493,809 - +0.4
5,493,809 - -0.5
5,493,809 - +0.5
5,493,901 + -1.0
5,493,902 - Echvi_4586 0.10 +0.6
5,493,907 + Echvi_4586 0.11 -0.2
5,493,907 + Echvi_4586 0.11 -1.1
5,493,974 + Echvi_4586 0.17 -0.2
5,493,976 + Echvi_4586 0.17 -0.4
5,493,976 + Echvi_4586 0.17 -1.0
5,493,977 - Echvi_4586 0.17 -1.3
5,494,016 - Echvi_4586 0.21 +0.3
5,494,016 - Echvi_4586 0.21 -0.5
5,494,104 - Echvi_4586 0.30 -0.2
5,494,105 + Echvi_4586 0.30 +1.0
5,494,106 - Echvi_4586 0.30 +2.5
5,494,133 + Echvi_4586 0.33 -0.5
5,494,197 + Echvi_4586 0.39 +0.8
5,494,198 - Echvi_4586 0.39 -0.0
5,494,198 - Echvi_4586 0.39 -1.9
5,494,198 - Echvi_4586 0.39 -2.1
5,494,209 - Echvi_4586 0.40 -0.4
5,494,209 - Echvi_4586 0.40 +1.4
5,494,348 + Echvi_4586 0.54 +1.3
5,494,484 + Echvi_4586 0.68 +0.5
5,494,746 + +0.5
5,494,797 - +1.8
5,494,830 + +0.1
5,494,967 + Echvi_4587 0.34 +0.3
5,494,967 + Echvi_4587 0.34 -0.2
5,494,968 - Echvi_4587 0.34 -0.7
5,494,968 - Echvi_4587 0.34 -0.6
5,494,968 - Echvi_4587 0.34 -1.4
5,494,995 - Echvi_4587 0.40 -0.5
5,495,018 - Echvi_4587 0.44 +0.3
5,495,094 - Echvi_4587 0.59 -0.5
5,495,312 + +0.3
5,495,463 + Echvi_4588 0.18 +1.8
5,495,463 + Echvi_4588 0.18 -0.6
5,495,463 + Echvi_4588 0.18 -0.5
5,495,463 + Echvi_4588 0.18 -0.7
5,495,463 + Echvi_4588 0.18 -1.5
5,495,463 + Echvi_4588 0.18 -0.2
5,495,464 - Echvi_4588 0.18 +0.4
5,495,464 - Echvi_4588 0.18 -0.7
5,495,464 - Echvi_4588 0.18 +1.3
5,495,464 - Echvi_4588 0.18 +0.2
5,495,466 - Echvi_4588 0.18 +1.3
5,495,466 - Echvi_4588 0.18 -1.0
5,495,534 - Echvi_4588 0.25 -0.0
5,495,558 + Echvi_4588 0.28 -0.2
5,495,581 + Echvi_4588 0.30 -1.1
5,495,603 - Echvi_4588 0.33 +0.8
5,495,645 + Echvi_4588 0.37 +0.6
5,495,652 - Echvi_4588 0.38 +0.6
5,495,934 + Echvi_4588 0.68 -1.7
5,495,982 - Echvi_4588 0.73 +0.1
5,496,046 + Echvi_4588 0.80 +1.3
5,496,047 - Echvi_4588 0.80 +1.4
5,496,116 + Echvi_4588 0.87 -0.6
5,496,164 - +0.2
5,496,164 - -1.3
5,496,195 - -1.3
5,496,212 - +0.2
5,496,234 - -0.3
5,496,244 + +1.0
5,496,245 - -0.9
5,496,250 - -1.2
5,496,252 + +1.4
5,496,258 + +0.2
5,496,259 - +0.3
5,496,263 + +0.7
5,496,264 - +1.8

Or see this region's nucleotide sequence