Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4452 and Echvi_4453 are separated by 53 nucleotides Echvi_4453 and Echvi_4454 are separated by 424 nucleotides Echvi_4454 and Echvi_4455 are separated by 297 nucleotides
Echvi_4452: Echvi_4452 - SusD family., at 5,328,048 to 5,329,406
_4452
Echvi_4453: Echvi_4453 - hypothetical protein, at 5,329,460 to 5,329,729
_4453
Echvi_4454: Echvi_4454 - hypothetical protein, at 5,330,154 to 5,330,609
_4454
Echvi_4455: Echvi_4455 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 5,330,907 to 5,331,491
_4455
Position (kb) 5330
5331 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5329.166 kb on - strand, within Echvi_4452 at 5329.289 kb on - strand at 5329.324 kb on + strand at 5329.345 kb on - strand at 5329.345 kb on - strand at 5329.345 kb on - strand at 5329.358 kb on - strand at 5329.439 kb on + strand at 5329.568 kb on + strand, within Echvi_4453 at 5329.609 kb on + strand, within Echvi_4453 at 5329.712 kb on - strand at 5329.784 kb on - strand at 5329.799 kb on + strand at 5329.800 kb on - strand at 5329.812 kb on + strand at 5329.849 kb on + strand at 5329.850 kb on - strand at 5329.850 kb on - strand at 5329.859 kb on - strand at 5329.863 kb on + strand at 5329.864 kb on - strand at 5329.864 kb on - strand at 5329.897 kb on - strand at 5329.921 kb on + strand at 5329.921 kb on + strand at 5329.926 kb on + strand at 5329.926 kb on + strand at 5329.926 kb on + strand at 5329.927 kb on - strand at 5329.927 kb on - strand at 5329.946 kb on - strand at 5329.946 kb on - strand at 5329.946 kb on - strand at 5329.969 kb on - strand at 5329.969 kb on - strand at 5330.022 kb on - strand at 5330.022 kb on - strand at 5330.022 kb on - strand at 5330.022 kb on - strand at 5330.070 kb on - strand at 5330.084 kb on + strand at 5330.090 kb on + strand at 5330.090 kb on + strand at 5330.093 kb on + strand at 5330.098 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.112 kb on + strand at 5330.112 kb on + strand at 5330.204 kb on + strand, within Echvi_4454 at 5330.223 kb on + strand, within Echvi_4454 at 5330.307 kb on + strand, within Echvi_4454 at 5330.307 kb on + strand, within Echvi_4454 at 5330.308 kb on - strand, within Echvi_4454 at 5330.308 kb on - strand, within Echvi_4454 at 5330.308 kb on - strand, within Echvi_4454 at 5330.308 kb on - strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.310 kb on - strand, within Echvi_4454 at 5330.310 kb on - strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.312 kb on - strand, within Echvi_4454 at 5330.312 kb on - strand, within Echvi_4454 at 5330.337 kb on + strand, within Echvi_4454 at 5330.395 kb on - strand, within Echvi_4454 at 5330.579 kb on + strand at 5330.579 kb on + strand at 5330.580 kb on - strand at 5330.582 kb on + strand at 5330.582 kb on + strand at 5330.583 kb on - strand at 5330.583 kb on - strand at 5330.586 kb on + strand at 5330.611 kb on + strand at 5330.611 kb on + strand at 5330.611 kb on + strand at 5330.632 kb on + strand at 5330.633 kb on - strand at 5330.649 kb on - strand at 5330.676 kb on - strand at 5330.676 kb on - strand at 5330.702 kb on - strand at 5330.702 kb on - strand at 5330.760 kb on + strand at 5330.761 kb on - strand at 5330.797 kb on - strand at 5330.812 kb on - strand at 5330.854 kb on - strand at 5330.917 kb on + strand at 5330.918 kb on - strand at 5330.918 kb on - strand at 5330.965 kb on + strand at 5330.966 kb on - strand, within Echvi_4455 at 5330.978 kb on - strand, within Echvi_4455 at 5330.979 kb on + strand, within Echvi_4455 at 5330.979 kb on + strand, within Echvi_4455 at 5330.980 kb on - strand, within Echvi_4455 at 5330.980 kb on - strand, within Echvi_4455 at 5330.998 kb on - strand, within Echvi_4455 at 5331.071 kb on + strand, within Echvi_4455 at 5331.071 kb on + strand, within Echvi_4455 at 5331.071 kb on + strand, within Echvi_4455 at 5331.072 kb on - strand, within Echvi_4455 at 5331.075 kb on + strand, within Echvi_4455 at 5331.078 kb on - strand, within Echvi_4455 at 5331.078 kb on - strand, within Echvi_4455 at 5331.167 kb on - strand, within Echvi_4455 at 5331.292 kb on + strand, within Echvi_4455 at 5331.292 kb on + strand, within Echvi_4455 at 5331.293 kb on - strand, within Echvi_4455 at 5331.293 kb on - strand, within Echvi_4455 at 5331.336 kb on + strand, within Echvi_4455 at 5331.336 kb on + strand, within Echvi_4455 at 5331.393 kb on + strand, within Echvi_4455 at 5331.393 kb on + strand, within Echvi_4455 at 5331.393 kb on + strand, within Echvi_4455 at 5331.394 kb on - strand, within Echvi_4455 at 5331.439 kb on + strand at 5331.446 kb on + strand at 5331.446 kb on + strand at 5331.446 kb on + strand at 5331.446 kb on + strand at 5331.447 kb on - strand at 5331.490 kb on - strand at 5331.503 kb on + strand at 5331.523 kb on + strand at 5331.531 kb on - strand at 5331.586 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 5,329,166 - Echvi_4452 0.82 -0.2 5,329,289 - -0.5 5,329,324 + -1.0 5,329,345 - +0.7 5,329,345 - -0.4 5,329,345 - -0.1 5,329,358 - -0.9 5,329,439 + +0.0 5,329,568 + Echvi_4453 0.40 -0.6 5,329,609 + Echvi_4453 0.55 -0.9 5,329,712 - -0.5 5,329,784 - +0.2 5,329,799 + -0.3 5,329,800 - -1.1 5,329,812 + -0.1 5,329,849 + +3.4 5,329,850 - +0.4 5,329,850 - -1.9 5,329,859 - -0.1 5,329,863 + -0.5 5,329,864 - +1.6 5,329,864 - -0.1 5,329,897 - +1.0 5,329,921 + +0.5 5,329,921 + -1.1 5,329,926 + -1.9 5,329,926 + -1.8 5,329,926 + +1.6 5,329,927 - +1.0 5,329,927 - -0.5 5,329,946 - +0.4 5,329,946 - +1.2 5,329,946 - +0.6 5,329,969 - +0.9 5,329,969 - +2.0 5,330,022 - +0.4 5,330,022 - +1.4 5,330,022 - -0.1 5,330,022 - +0.9 5,330,070 - -0.1 5,330,084 + -0.4 5,330,090 + +0.6 5,330,090 + -0.7 5,330,093 + -2.4 5,330,098 + -0.4 5,330,103 + +1.9 5,330,103 + -1.3 5,330,103 + -1.9 5,330,103 + -1.1 5,330,103 + +1.3 5,330,103 + -1.3 5,330,112 + +0.4 5,330,112 + -0.4 5,330,204 + Echvi_4454 0.11 -0.1 5,330,223 + Echvi_4454 0.15 -0.7 5,330,307 + Echvi_4454 0.34 +0.7 5,330,307 + Echvi_4454 0.34 -1.7 5,330,308 - Echvi_4454 0.34 +0.2 5,330,308 - Echvi_4454 0.34 +0.6 5,330,308 - Echvi_4454 0.34 +0.5 5,330,308 - Echvi_4454 0.34 +0.9 5,330,309 + Echvi_4454 0.34 -1.8 5,330,309 + Echvi_4454 0.34 -0.6 5,330,309 + Echvi_4454 0.34 -1.0 5,330,309 + Echvi_4454 0.34 -0.4 5,330,309 + Echvi_4454 0.34 -0.1 5,330,309 + Echvi_4454 0.34 +0.3 5,330,310 - Echvi_4454 0.34 -0.3 5,330,310 - Echvi_4454 0.34 -0.7 5,330,311 + Echvi_4454 0.34 -1.1 5,330,311 + Echvi_4454 0.34 +0.0 5,330,311 + Echvi_4454 0.34 -1.5 5,330,311 + Echvi_4454 0.34 +0.4 5,330,311 + Echvi_4454 0.34 -0.5 5,330,311 + Echvi_4454 0.34 -1.0 5,330,311 + Echvi_4454 0.34 -0.3 5,330,312 - Echvi_4454 0.35 -0.8 5,330,312 - Echvi_4454 0.35 +0.4 5,330,337 + Echvi_4454 0.40 -0.1 5,330,395 - Echvi_4454 0.53 +0.5 5,330,579 + +0.2 5,330,579 + -0.4 5,330,580 - -0.0 5,330,582 + -0.2 5,330,582 + +1.3 5,330,583 - +3.2 5,330,583 - +1.1 5,330,586 + -2.3 5,330,611 + -2.5 5,330,611 + -1.0 5,330,611 + -0.4 5,330,632 + +0.6 5,330,633 - +0.3 5,330,649 - +0.5 5,330,676 - -1.7 5,330,676 - -0.1 5,330,702 - +1.1 5,330,702 - +2.4 5,330,760 + -0.3 5,330,761 - -0.0 5,330,797 - +0.9 5,330,812 - -1.1 5,330,854 - +1.5 5,330,917 + -2.1 5,330,918 - +0.2 5,330,918 - -0.7 5,330,965 + +2.2 5,330,966 - Echvi_4455 0.10 -0.8 5,330,978 - Echvi_4455 0.12 +0.9 5,330,979 + Echvi_4455 0.12 +0.1 5,330,979 + Echvi_4455 0.12 -0.7 5,330,980 - Echvi_4455 0.12 -0.2 5,330,980 - Echvi_4455 0.12 +1.7 5,330,998 - Echvi_4455 0.16 +3.0 5,331,071 + Echvi_4455 0.28 -1.4 5,331,071 + Echvi_4455 0.28 +0.5 5,331,071 + Echvi_4455 0.28 -1.0 5,331,072 - Echvi_4455 0.28 -1.0 5,331,075 + Echvi_4455 0.29 -0.5 5,331,078 - Echvi_4455 0.29 -2.1 5,331,078 - Echvi_4455 0.29 +0.7 5,331,167 - Echvi_4455 0.44 +0.5 5,331,292 + Echvi_4455 0.66 -1.0 5,331,292 + Echvi_4455 0.66 +0.3 5,331,293 - Echvi_4455 0.66 +0.2 5,331,293 - Echvi_4455 0.66 -1.3 5,331,336 + Echvi_4455 0.73 +1.3 5,331,336 + Echvi_4455 0.73 -0.5 5,331,393 + Echvi_4455 0.83 -0.5 5,331,393 + Echvi_4455 0.83 -1.3 5,331,393 + Echvi_4455 0.83 -0.5 5,331,394 - Echvi_4455 0.83 -2.0 5,331,439 + -0.0 5,331,446 + +0.6 5,331,446 + -0.9 5,331,446 + +0.7 5,331,446 + -0.6 5,331,447 - -0.8 5,331,490 - +2.4 5,331,503 + +0.4 5,331,523 + -1.1 5,331,531 - +1.9 5,331,586 + +0.5
Or see this region's nucleotide sequence