Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4385
Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | m.b. Nalidixic 0.008 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 5,244,460 | + | -0.2 | |||
| 5,244,460 | + | -0.5 | |||
| 5,244,467 | + | -1.0 | |||
| 5,244,483 | + | -0.2 | |||
| 5,244,483 | + | +1.3 | |||
| 5,244,484 | - | -0.0 | |||
| 5,244,642 | - | +0.5 | |||
| 5,244,779 | + | Echvi_4387 | 0.15 | -1.3 | |
| 5,244,834 | + | Echvi_4387 | 0.20 | +0.4 | |
| 5,244,834 | + | Echvi_4387 | 0.20 | +0.8 | |
| 5,244,847 | + | Echvi_4387 | 0.22 | -0.0 | |
| 5,244,847 | + | Echvi_4387 | 0.22 | -0.4 | |
| 5,244,850 | + | Echvi_4387 | 0.22 | -0.6 | |
| 5,244,850 | + | Echvi_4387 | 0.22 | -0.8 | |
| 5,245,036 | + | Echvi_4387 | 0.42 | -1.6 |
Or see this region's nucleotide sequence