Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4047 and Echvi_4048 are separated by 83 nucleotides Echvi_4048 and Echvi_4049 are separated by 33 nucleotides Echvi_4049 and Echvi_4050 are separated by 65 nucleotides Echvi_4050 and Echvi_4051 are separated by 94 nucleotides
Echvi_4047: Echvi_4047 - hypothetical protein, at 4,853,073 to 4,853,267
_4047
Echvi_4048: Echvi_4048 - hypothetical protein, at 4,853,351 to 4,853,527
_4048
Echvi_4049: Echvi_4049 - Uncharacterized protein conserved in bacteria, at 4,853,561 to 4,854,013
_4049
Echvi_4050: Echvi_4050 - hypothetical protein, at 4,854,079 to 4,856,952
_4050
Echvi_4051: Echvi_4051 - ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains), at 4,857,047 to 4,860,313
_4051
Position (kb) 4854
4855
4856
4857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4853.140 kb on - strand, within Echvi_4047 at 4853.169 kb on - strand, within Echvi_4047 at 4853.193 kb on + strand, within Echvi_4047 at 4853.194 kb on - strand, within Echvi_4047 at 4853.212 kb on + strand, within Echvi_4047 at 4853.295 kb on + strand at 4853.295 kb on + strand at 4853.318 kb on + strand at 4853.318 kb on + strand at 4853.384 kb on - strand, within Echvi_4048 at 4853.578 kb on + strand at 4853.593 kb on + strand at 4853.684 kb on + strand, within Echvi_4049 at 4853.685 kb on - strand, within Echvi_4049 at 4853.702 kb on - strand, within Echvi_4049 at 4853.726 kb on + strand, within Echvi_4049 at 4853.774 kb on - strand, within Echvi_4049 at 4853.774 kb on - strand, within Echvi_4049 at 4853.774 kb on - strand, within Echvi_4049 at 4853.794 kb on + strand, within Echvi_4049 at 4853.795 kb on - strand, within Echvi_4049 at 4853.805 kb on + strand, within Echvi_4049 at 4853.871 kb on + strand, within Echvi_4049 at 4853.949 kb on - strand at 4854.003 kb on + strand at 4854.011 kb on + strand at 4854.011 kb on + strand at 4854.011 kb on + strand at 4854.011 kb on + strand at 4854.011 kb on + strand at 4854.012 kb on - strand at 4854.014 kb on + strand at 4854.014 kb on + strand at 4854.014 kb on + strand at 4854.014 kb on + strand at 4854.091 kb on + strand at 4854.463 kb on - strand, within Echvi_4050 at 4855.238 kb on + strand, within Echvi_4050 at 4855.245 kb on - strand, within Echvi_4050 at 4855.245 kb on - strand, within Echvi_4050 at 4856.871 kb on + strand at 4856.964 kb on - strand at 4856.968 kb on - strand at 4856.982 kb on - strand at 4856.990 kb on - strand at 4857.010 kb on - strand at 4857.063 kb on + strand at 4857.063 kb on + strand at 4857.086 kb on + strand at 4857.168 kb on + strand at 4857.168 kb on + strand at 4857.189 kb on + strand at 4857.224 kb on + strand at 4857.471 kb on - strand, within Echvi_4051 at 4857.503 kb on - strand, within Echvi_4051
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 4,853,140 - Echvi_4047 0.34 +0.0 4,853,169 - Echvi_4047 0.49 -0.5 4,853,193 + Echvi_4047 0.62 -0.2 4,853,194 - Echvi_4047 0.62 +0.9 4,853,212 + Echvi_4047 0.71 -0.3 4,853,295 + -1.1 4,853,295 + -2.9 4,853,318 + -0.1 4,853,318 + -0.9 4,853,384 - Echvi_4048 0.19 +0.0 4,853,578 + -0.0 4,853,593 + -1.5 4,853,684 + Echvi_4049 0.27 +0.6 4,853,685 - Echvi_4049 0.27 +0.9 4,853,702 - Echvi_4049 0.31 +0.2 4,853,726 + Echvi_4049 0.36 +0.7 4,853,774 - Echvi_4049 0.47 -1.2 4,853,774 - Echvi_4049 0.47 +0.5 4,853,774 - Echvi_4049 0.47 -0.0 4,853,794 + Echvi_4049 0.51 -0.8 4,853,795 - Echvi_4049 0.52 -1.4 4,853,805 + Echvi_4049 0.54 +1.9 4,853,871 + Echvi_4049 0.68 +1.1 4,853,949 - +1.9 4,854,003 + -0.4 4,854,011 + -0.1 4,854,011 + -0.1 4,854,011 + +0.3 4,854,011 + -1.0 4,854,011 + -0.9 4,854,012 - -0.9 4,854,014 + -1.1 4,854,014 + +1.2 4,854,014 + +0.6 4,854,014 + +0.3 4,854,091 + -2.5 4,854,463 - Echvi_4050 0.13 -2.8 4,855,238 + Echvi_4050 0.40 +0.3 4,855,245 - Echvi_4050 0.41 -0.7 4,855,245 - Echvi_4050 0.41 -0.9 4,856,871 + -0.5 4,856,964 - -0.5 4,856,968 - +0.7 4,856,982 - -0.3 4,856,990 - +1.9 4,857,010 - -0.5 4,857,063 + +0.5 4,857,063 + -3.1 4,857,086 + -0.1 4,857,168 + -1.3 4,857,168 + -2.8 4,857,189 + -3.5 4,857,224 + -2.1 4,857,471 - Echvi_4051 0.13 -0.2 4,857,503 - Echvi_4051 0.14 -0.9
Or see this region's nucleotide sequence