Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3996 and Echvi_3997 are separated by 57 nucleotides Echvi_3997 and Echvi_3998 are separated by 111 nucleotides Echvi_3998 and Echvi_3999 overlap by 29 nucleotides Echvi_3999 and Echvi_4000 are separated by 67 nucleotides
Echvi_3996: Echvi_3996 - RNA polymerase sigma factor, sigma-70 family, at 4,791,319 to 4,791,993
_3996
Echvi_3997: Echvi_3997 - hypothetical protein, at 4,792,051 to 4,792,158
_3997
Echvi_3998: Echvi_3998 - DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, at 4,792,270 to 4,792,497
_3998
Echvi_3999: Echvi_3999 - hypothetical protein, at 4,792,469 to 4,792,588
_3999
Echvi_4000: Echvi_4000 - Metal-dependent hydrolase, at 4,792,656 to 4,793,528
_4000
Position (kb) 4792
4793 Strain fitness (log2 ratio) -2
-1
0
1 at 4791.543 kb on + strand, within Echvi_3996 at 4791.581 kb on + strand, within Echvi_3996 at 4791.582 kb on - strand, within Echvi_3996 at 4791.701 kb on + strand, within Echvi_3996 at 4791.701 kb on + strand, within Echvi_3996 at 4791.702 kb on - strand, within Echvi_3996 at 4791.702 kb on - strand, within Echvi_3996 at 4791.702 kb on - strand, within Echvi_3996 at 4791.742 kb on - strand, within Echvi_3996 at 4791.973 kb on - strand at 4792.018 kb on - strand at 4792.018 kb on - strand at 4792.063 kb on + strand, within Echvi_3997 at 4792.065 kb on + strand, within Echvi_3997 at 4792.065 kb on + strand, within Echvi_3997 at 4792.066 kb on - strand, within Echvi_3997 at 4792.161 kb on - strand at 4792.260 kb on + strand at 4792.261 kb on - strand at 4792.341 kb on + strand, within Echvi_3998 at 4792.374 kb on - strand, within Echvi_3998 at 4792.382 kb on + strand, within Echvi_3998 at 4792.530 kb on + strand, within Echvi_3999 at 4792.530 kb on + strand, within Echvi_3999 at 4792.550 kb on - strand, within Echvi_3999 at 4792.616 kb on + strand at 4792.641 kb on + strand at 4792.687 kb on + strand at 4792.820 kb on + strand, within Echvi_4000 at 4792.873 kb on + strand, within Echvi_4000 at 4792.923 kb on - strand, within Echvi_4000 at 4792.923 kb on - strand, within Echvi_4000 at 4792.932 kb on + strand, within Echvi_4000 at 4792.932 kb on + strand, within Echvi_4000 at 4792.943 kb on - strand, within Echvi_4000 at 4792.943 kb on - strand, within Echvi_4000 at 4793.084 kb on + strand, within Echvi_4000 at 4793.093 kb on + strand, within Echvi_4000 at 4793.093 kb on + strand, within Echvi_4000 at 4793.250 kb on - strand, within Echvi_4000 at 4793.286 kb on + strand, within Echvi_4000 at 4793.287 kb on - strand, within Echvi_4000 at 4793.326 kb on - strand, within Echvi_4000 at 4793.360 kb on + strand, within Echvi_4000 at 4793.361 kb on - strand, within Echvi_4000 at 4793.370 kb on - strand, within Echvi_4000 at 4793.370 kb on - strand, within Echvi_4000 at 4793.450 kb on + strand at 4793.467 kb on - strand at 4793.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 4,791,543 + Echvi_3996 0.33 +0.1 4,791,581 + Echvi_3996 0.39 +0.7 4,791,582 - Echvi_3996 0.39 +0.9 4,791,701 + Echvi_3996 0.57 -1.6 4,791,701 + Echvi_3996 0.57 -0.0 4,791,702 - Echvi_3996 0.57 -2.0 4,791,702 - Echvi_3996 0.57 +1.4 4,791,702 - Echvi_3996 0.57 +1.6 4,791,742 - Echvi_3996 0.63 -1.6 4,791,973 - -0.7 4,792,018 - +0.6 4,792,018 - -0.8 4,792,063 + Echvi_3997 0.11 -0.6 4,792,065 + Echvi_3997 0.13 +0.0 4,792,065 + Echvi_3997 0.13 +0.1 4,792,066 - Echvi_3997 0.14 -0.0 4,792,161 - +0.3 4,792,260 + -1.8 4,792,261 - +0.6 4,792,341 + Echvi_3998 0.31 +0.4 4,792,374 - Echvi_3998 0.46 +0.1 4,792,382 + Echvi_3998 0.49 +1.0 4,792,530 + Echvi_3999 0.51 -0.2 4,792,530 + Echvi_3999 0.51 -1.9 4,792,550 - Echvi_3999 0.68 -0.5 4,792,616 + -0.1 4,792,641 + -0.6 4,792,687 + -2.5 4,792,820 + Echvi_4000 0.19 +0.5 4,792,873 + Echvi_4000 0.25 -0.7 4,792,923 - Echvi_4000 0.31 -0.7 4,792,923 - Echvi_4000 0.31 -0.9 4,792,932 + Echvi_4000 0.32 -0.7 4,792,932 + Echvi_4000 0.32 +0.0 4,792,943 - Echvi_4000 0.33 +0.4 4,792,943 - Echvi_4000 0.33 -0.9 4,793,084 + Echvi_4000 0.49 -2.4 4,793,093 + Echvi_4000 0.50 +0.9 4,793,093 + Echvi_4000 0.50 +0.5 4,793,250 - Echvi_4000 0.68 +0.9 4,793,286 + Echvi_4000 0.72 +0.3 4,793,287 - Echvi_4000 0.72 +0.2 4,793,326 - Echvi_4000 0.77 +0.6 4,793,360 + Echvi_4000 0.81 -0.4 4,793,361 - Echvi_4000 0.81 +0.6 4,793,370 - Echvi_4000 0.82 -1.1 4,793,370 - Echvi_4000 0.82 -1.6 4,793,450 + -0.3 4,793,467 - +0.8 4,793,467 - -0.2
Or see this region's nucleotide sequence