Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3553

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
4,210,971	+				+0.2
4,210,974	+				+0.6
4,210,975	-				-2.3
4,210,975	-				+0.6
4,211,007	+				-1.5
4,211,008	-				+0.3
4,211,022	-				+0.9
4,211,041	+				-0.5
4,211,072	+				-0.3
4,211,082	+				-0.5
4,211,082	+				-1.5
4,211,160	+		Echvi_3552	0.14	+0.1
4,211,204	-		Echvi_3552	0.21	-0.9
4,211,246	+		Echvi_3552	0.28	+0.0
4,211,246	+		Echvi_3552	0.28	-0.5
4,211,247	-		Echvi_3552	0.28	+0.4
4,211,248	+		Echvi_3552	0.28	+0.3
4,211,248	+		Echvi_3552	0.28	+0.7
4,211,267	-		Echvi_3552	0.32	+1.2
4,211,267	-		Echvi_3552	0.32	+0.1
4,211,413	+		Echvi_3552	0.56	+0.4
4,211,449	+		Echvi_3552	0.62	+1.4
4,211,450	-		Echvi_3552	0.62	+0.1
4,211,450	-		Echvi_3552	0.62	-0.2
4,211,454	+				+1.9
4,211,509	+		Echvi_3552	0.72	-2.3
4,211,510	-		Echvi_3552	0.72	-0.8
4,211,551	+		Echvi_3552	0.79	-1.2
4,211,552	-		Echvi_3552	0.79	-1.3
4,211,554	+		Echvi_3552	0.80	-0.9
4,211,575	+		Echvi_3552	0.83	-0.1
4,211,575	+		Echvi_3552	0.83	-0.0
4,211,576	-		Echvi_3552	0.83	-1.2
4,211,576	-		Echvi_3552	0.83	-0.6
4,211,630	+				+0.4
4,211,674	+				-0.1
4,211,678	-				+0.3
4,211,710	+				-0.5
4,211,710	+				+0.2
4,211,743	+				+0.4
4,211,744	-				-0.9
4,211,744	-				-1.0
4,211,787	+				-0.3
4,211,788	-				+1.5
4,212,009	+		Echvi_3553	0.12	+1.3
4,212,113	-		Echvi_3553	0.21	-0.9
4,212,116	-		Echvi_3553	0.21	+0.1
4,212,116	-		Echvi_3553	0.21	+0.3
4,212,163	+		Echvi_3553	0.25	-0.1
4,212,185	-		Echvi_3553	0.27	+0.1
4,212,352	+		Echvi_3553	0.40	+0.9
4,212,394	-		Echvi_3553	0.43	-0.9
4,212,394	-		Echvi_3553	0.43	-0.6
4,212,451	-		Echvi_3553	0.48	-0.3
4,212,451	-		Echvi_3553	0.48	+0.8
4,212,462	-		Echvi_3553	0.49	+0.9
4,212,462	-		Echvi_3553	0.49	-0.1
4,212,462	-		Echvi_3553	0.49	+0.2
4,212,462	-		Echvi_3553	0.49	+0.6
4,212,462	-		Echvi_3553	0.49	-0.2
4,212,479	+		Echvi_3553	0.50	+0.0
4,212,480	-		Echvi_3553	0.50	-0.3
4,212,480	-		Echvi_3553	0.50	-0.7
4,212,499	+		Echvi_3553	0.52	+0.9
4,212,500	-		Echvi_3553	0.52	-0.1
4,212,524	+		Echvi_3553	0.54	+0.3
4,212,542	+		Echvi_3553	0.55	+0.1
4,212,595	+		Echvi_3553	0.60	+0.7
4,212,596	-		Echvi_3553	0.60	+0.4
4,212,596	-		Echvi_3553	0.60	-0.7
4,212,597	+		Echvi_3553	0.60	-1.6
4,212,597	+		Echvi_3553	0.60	+0.8
4,212,597	+		Echvi_3553	0.60	+0.1
4,212,598	-		Echvi_3553	0.60	+0.8
4,212,598	-		Echvi_3553	0.60	-0.3
4,212,598	-		Echvi_3553	0.60	-0.1
4,212,601	-		Echvi_3553	0.60	+1.3
4,212,740	-		Echvi_3553	0.71	+0.4
4,212,747	+		Echvi_3553	0.72	+1.6
4,212,820	-		Echvi_3553	0.78	+0.2
4,212,834	+		Echvi_3553	0.79	-0.6
4,212,843	-		Echvi_3553	0.79	-0.3
4,212,857	+		Echvi_3553	0.81	+0.0
4,212,857	+		Echvi_3553	0.81	+0.3
4,212,861	+		Echvi_3553	0.81	+0.6
4,212,861	+		Echvi_3553	0.81	+0.8
4,212,861	+		Echvi_3553	0.81	+0.9
4,212,861	+		Echvi_3553	0.81	+0.6
4,212,861	+		Echvi_3553	0.81	+0.9
4,212,861	+		Echvi_3553	0.81	+0.3
4,212,861	+		Echvi_3553	0.81	+0.1
4,212,861	+		Echvi_3553	0.81	-0.7
4,212,861	+		Echvi_3553	0.81	+1.5
4,212,861	+		Echvi_3553	0.81	+0.6
4,212,862	-		Echvi_3553	0.81	+0.3
4,212,862	-		Echvi_3553	0.81	-0.6
4,212,862	-		Echvi_3553	0.81	-0.6
4,212,862	-		Echvi_3553	0.81	+1.5
4,212,862	-		Echvi_3553	0.81	-0.1
4,212,862	-		Echvi_3553	0.81	+0.1
4,212,863	+		Echvi_3553	0.81	+0.2
4,212,863	+		Echvi_3553	0.81	-0.1
4,212,863	+		Echvi_3553	0.81	-1.7
4,212,863	+		Echvi_3553	0.81	+0.5
4,212,863	+		Echvi_3553	0.81	+0.0
4,212,863	+		Echvi_3553	0.81	+0.1
4,212,863	+		Echvi_3553	0.81	+0.2
4,212,863	+		Echvi_3553	0.81	-1.0
4,212,864	-		Echvi_3553	0.81	-0.1
4,212,864	-		Echvi_3553	0.81	-1.6
4,212,864	-		Echvi_3553	0.81	+0.2
4,212,864	-		Echvi_3553	0.81	-0.4
4,212,864	-		Echvi_3553	0.81	-0.7
4,212,867	-		Echvi_3553	0.81	+2.2
4,212,922	-		Echvi_3553	0.86	-0.1
4,212,951	+		Echvi_3553	0.88	-0.9
4,212,952	-		Echvi_3553	0.88	-0.1
4,213,009	-				+0.3
4,213,068	-				-1.3
4,213,090	-				-0.5
4,213,099	-				+0.6
4,213,237	+				+1.2
4,213,256	+				+1.3
4,213,256	+				+0.1
4,213,261	-				-0.6
4,213,276	-				-0.2
4,213,303	-				-1.6
4,213,374	-				+0.5
4,213,387	-				-0.2
4,213,387	-				+2.5
4,213,401	-				+0.1
4,213,410	+				+1.1
4,213,411	-				-0.2
4,213,411	-				-2.4
4,213,505	-		Echvi_3554	0.36	-0.5
4,213,552	+		Echvi_3554	0.55	+1.1
4,213,552	+		Echvi_3554	0.55	-0.8
4,213,552	+		Echvi_3554	0.55	-0.7
4,213,553	-		Echvi_3554	0.55	+1.9
4,213,556	+		Echvi_3554	0.56	-0.1
4,213,556	+				+2.3
4,213,556	+		Echvi_3554	0.56	-0.3
4,213,557	-		Echvi_3554	0.57	-0.1
4,213,557	-		Echvi_3554	0.57	-0.8
4,213,557	-		Echvi_3554	0.57	+0.3
4,213,557	-		Echvi_3554	0.57	+0.1
4,213,557	-		Echvi_3554	0.57	+0.5
4,213,619	+		Echvi_3554	0.81	+1.4
4,213,632	+		Echvi_3554	0.86	-1.0
4,213,723	+				-0.8
4,213,727	+				-0.0
4,213,727	+				-0.5
4,213,727	+				+0.5
4,213,728	-				-0.3
4,213,728	-				+0.3
4,213,740	+				+0.3
4,213,749	-				+0.4
4,213,750	+				-1.0
4,213,750	+				-0.5
4,213,872	-				+0.8
4,213,886	-				+0.6
4,213,886	-				-0.3
4,213,930	-				-0.4
4,213,979	+				+0.9
4,213,979	+				-0.3
4,213,979	+				-1.2
4,213,980	-				+1.0
4,213,990	+				-0.7
4,213,990	+				+1.4
4,213,990	+				-1.6
4,213,990	+				-1.0
4,213,991	-				-0.3
4,214,002	-				+0.9
4,214,062	+				+0.3
4,214,063	-				+0.4
4,214,063	-				-0.3
4,214,063	-				+0.4
4,214,076	+				-1.1
4,214,077	-				+0.8