Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3371

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
3,976,575	-				-0.3
3,976,597	+				-0.9
3,976,597	+				+0.3
3,976,631	-				+0.7
3,976,631	-				+1.6
3,976,631	-				-1.0
3,976,631	-				+1.5
3,976,638	+				+0.5
3,976,639	-				-0.1
3,976,642	-				+0.5
3,976,642	-				-0.9
3,976,642	-				+0.7
3,976,685	+				+0.6
3,976,685	+				-0.1
3,976,685	+				+1.9
3,976,697	-				-0.9
3,976,853	+				-0.7
3,976,877	+		Echvi_3369	0.14	+0.8
3,976,941	+		Echvi_3369	0.35	+0.2
3,976,941	+		Echvi_3369	0.35	-0.1
3,977,078	+		Echvi_3369	0.80	+0.1
3,977,078	+		Echvi_3369	0.80	+2.0
3,977,086	+		Echvi_3369	0.82	+0.5
3,977,089	-		Echvi_3369	0.83	+1.9
3,977,105	+		Echvi_3369	0.89	-0.4
3,977,105	+		Echvi_3369	0.89	-0.4
3,977,127	+				-0.1
3,977,131	+				-1.0
3,977,474	+		Echvi_3370	0.86	+0.3
3,977,475	-		Echvi_3370	0.86	+0.6
3,977,488	+		Echvi_3370	0.89	+1.3
3,977,488	+		Echvi_3370	0.89	-1.4
3,977,494	+				-0.6
3,977,495	-				-1.6
3,977,495	-				-1.7
3,977,495	-				-0.5
3,977,495	-				-0.3
3,977,516	-				-1.7
3,977,516	-				-0.7
3,977,528	+				-0.6
3,977,529	-				-0.3
3,977,601	-		Echvi_3371	0.10	-0.7
3,977,601	-		Echvi_3371	0.10	-2.6
3,977,641	+		Echvi_3371	0.15	-0.5
3,977,642	-		Echvi_3371	0.15	-0.4
3,977,677	+		Echvi_3371	0.18	-0.1
3,977,678	-		Echvi_3371	0.18	+0.2
3,977,682	+		Echvi_3371	0.19	+3.5
3,977,717	-		Echvi_3371	0.22	-1.8
3,977,724	+		Echvi_3371	0.23	+0.5
3,977,724	+		Echvi_3371	0.23	+1.9
3,977,725	-		Echvi_3371	0.23	-0.5
3,977,738	+		Echvi_3371	0.25	-0.0
3,977,835	-		Echvi_3371	0.35	+1.7
3,977,853	-		Echvi_3371	0.36	-0.2
3,977,883	-		Echvi_3371	0.40	+0.3
3,977,883	-		Echvi_3371	0.40	+0.4
3,977,883	-		Echvi_3371	0.40	+0.3
3,978,002	+		Echvi_3371	0.52	-1.4
3,978,018	-		Echvi_3371	0.53	-0.5
3,978,082	+		Echvi_3371	0.60	+0.3
3,978,120	-		Echvi_3371	0.64	-1.3
3,978,146	+		Echvi_3371	0.67	-1.5
3,978,146	+		Echvi_3371	0.67	-1.1
3,978,146	+		Echvi_3371	0.67	-0.8
3,978,147	-		Echvi_3371	0.67	-0.2
3,978,147	-		Echvi_3371	0.67	-0.2
3,978,270	-		Echvi_3371	0.79	-0.6
3,978,330	+		Echvi_3371	0.85	-0.5
3,978,336	+		Echvi_3371	0.86	+0.4
3,978,392	+				+0.9
3,978,393	-				+0.4
3,978,408	-				-1.0
3,978,494	+				-0.6
3,978,496	+				+1.3
3,978,500	+				-0.9
3,978,553	-				-0.7
3,978,557	+				+0.1
3,978,557	+				+0.1
3,978,565	-				-0.2
3,978,586	-				-0.4
3,978,591	+				+1.1
3,978,592	-				-0.0
3,978,653	+				+1.7
3,978,653	+				+1.4
3,978,654	-				+1.0
3,978,654	-				+0.1
3,978,663	-				+1.0
3,978,663	-				+0.1
3,978,740	+		Echvi_3372	0.32	+0.5
3,978,786	+		Echvi_3372	0.49	+0.9
3,978,787	-		Echvi_3372	0.50	+0.0
3,978,787	-		Echvi_3372	0.50	+0.9
3,978,789	-		Echvi_3372	0.51	-0.7
3,978,813	-		Echvi_3372	0.60	+0.0
3,978,880	-		Echvi_3372	0.85	+0.1
3,978,939	-				+1.0
3,978,943	-				+0.3
3,978,982	+				-0.4
3,978,982	+				-0.9
3,978,983	-				-0.5
3,978,983	-				-0.2
3,978,983	-				+0.0
3,978,983	-				-0.5
3,978,997	+				-1.1
3,979,042	-				-1.2
3,979,060	-				-1.8
3,979,093	+				-0.7
3,979,094	-				+2.5
3,979,094	-				-0.4
3,979,098	+				-0.4
3,979,098	+				-1.5
3,979,098	+				-0.1
3,979,111	-				+2.2
3,979,117	+				+0.2
3,979,118	-				+0.3
3,979,131	+				-2.1
3,979,144	+				+1.1
3,979,231	-				+1.1
3,979,231	-				-0.3
3,979,243	-				-0.6
3,979,243	-				+0.4
3,979,243	-				+0.3
3,979,333	-				+1.7
3,979,344	+				-1.3
3,979,351	+				+0.5
3,979,351	+				+0.1
3,979,351	+				-0.1
3,979,356	+				+0.1
3,979,356	+				-1.9
3,979,357	-				+0.9
3,979,372	+				+0.1
3,979,373	-				-0.1
3,979,401	+		Echvi_3373	0.12	+0.7
3,979,402	-		Echvi_3373	0.12	-1.3