Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3297

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
3,898,415	-				+2.7
3,898,426	-				+0.1
3,898,460	-				+1.0
3,898,568	+		Echvi_3296	0.19	+3.0
3,898,568	+		Echvi_3296	0.19	+4.0
3,898,568	+		Echvi_3296	0.19	+4.0
3,898,569	-		Echvi_3296	0.19	+3.5
3,898,569	-		Echvi_3296	0.19	+3.5
3,898,633	+		Echvi_3296	0.26	+2.4
3,898,633	+		Echvi_3296	0.26	+2.7
3,898,633	+		Echvi_3296	0.26	+2.3
3,898,725	+		Echvi_3296	0.35	+1.9
3,898,947	+				+3.9
3,898,959	+		Echvi_3296	0.59	+2.1
3,899,027	-		Echvi_3296	0.66	+3.4
3,899,035	+		Echvi_3296	0.67	+2.9
3,899,186	-		Echvi_3296	0.83	+1.9
3,899,219	-		Echvi_3296	0.86	+2.2
3,899,290	+				+2.6
3,899,345	+				+1.0
3,899,346	-				+3.8
3,899,346	-				+1.5
3,899,365	-				-0.8
3,899,376	+				-0.6
3,899,377	-				+2.7
3,899,431	+				+1.2
3,899,442	+				-0.0
3,899,476	+				-0.4
3,899,476	+				+0.9
3,899,476	+				+0.3
3,899,484	-				-0.4
3,899,484	-				-1.4
3,899,530	+				-0.7
3,899,531	-				+0.0
3,899,574	-				-0.9
3,899,588	+		Echvi_3297	0.10	+0.8
3,899,589	-		Echvi_3297	0.10	+2.1
3,899,772	-		Echvi_3297	0.21	+0.4
3,899,772	-		Echvi_3297	0.21	+0.2
3,899,777	+		Echvi_3297	0.21	-0.1
3,899,778	-		Echvi_3297	0.21	+0.7
3,899,869	+		Echvi_3297	0.26	+0.9
3,899,870	-		Echvi_3297	0.26	+0.3
3,899,870	-		Echvi_3297	0.26	-0.3
3,899,870	-		Echvi_3297	0.26	+0.5
3,899,873	+		Echvi_3297	0.26	+1.0
3,899,873	+		Echvi_3297	0.26	+0.5
3,899,873	+		Echvi_3297	0.26	+0.1
3,899,873	+		Echvi_3297	0.26	-0.9
3,899,900	+		Echvi_3297	0.28	-0.5
3,899,900	+		Echvi_3297	0.28	-0.4
3,899,901	-		Echvi_3297	0.28	+0.4
3,899,901	-		Echvi_3297	0.28	+1.5
3,899,901	-		Echvi_3297	0.28	-1.2
3,900,062	+		Echvi_3297	0.37	+1.0
3,900,065	+		Echvi_3297	0.37	+1.7
3,900,160	+		Echvi_3297	0.43	-1.4
3,900,196	+		Echvi_3297	0.45	-0.2
3,900,411	+		Echvi_3297	0.57	-1.4
3,900,412	-		Echvi_3297	0.57	-0.9
3,900,486	+		Echvi_3297	0.61	-0.9
3,900,487	-		Echvi_3297	0.61	-0.0
3,900,520	-		Echvi_3297	0.63	-0.1
3,900,604	+		Echvi_3297	0.68	-0.3
3,900,632	-		Echvi_3297	0.70	+0.7
3,900,637	-		Echvi_3297	0.70	+1.0
3,900,724	+		Echvi_3297	0.75	+1.3
3,900,850	-		Echvi_3297	0.82	-2.0
3,900,896	+		Echvi_3297	0.85	+0.2
3,900,896	+		Echvi_3297	0.85	+0.6
3,900,896	+		Echvi_3297	0.85	+0.8
3,900,896	+		Echvi_3297	0.85	+1.5
3,900,896	+		Echvi_3297	0.85	+1.4
3,900,896	+		Echvi_3297	0.85	+0.9
3,900,896	+		Echvi_3297	0.85	+0.6
3,900,897	-		Echvi_3297	0.85	+0.5
3,900,897	-		Echvi_3297	0.85	+0.5
3,900,897	-		Echvi_3297	0.85	+0.3
3,900,897	-		Echvi_3297	0.85	-1.2
3,900,972	+		Echvi_3297	0.89	-2.8
3,900,972	+		Echvi_3297	0.89	+0.3
3,901,031	+				-0.3
3,901,031	+				+0.9
3,901,031	+				+1.9
3,901,031	+				+1.0
3,901,032	-				+0.7
3,901,032	-				+1.2
3,901,033	+				-1.6
3,901,033	+				+1.2
3,901,033	+				+0.6
3,901,034	-				+1.0
3,901,034	-				+0.0
3,901,038	+				-0.7
3,901,164	-				-1.6
3,901,293	+				-0.6
3,901,293	+				+0.3
3,901,294	-				+0.1
3,901,298	+				+0.9
3,901,299	-				-0.4
3,901,299	-				+1.5
3,901,341	-				-0.1
3,901,346	+				+0.7
3,901,347	-				+0.2
3,901,477	+				-0.8
3,901,478	-				-0.6
3,901,479	+				-1.7
3,901,549	+				-1.4
3,901,615	+				+0.7
3,901,636	+				-0.4
3,901,701	+		Echvi_3298	0.11	+1.2
3,901,814	+		Echvi_3298	0.32	-0.9
3,901,815	-		Echvi_3298	0.32	-0.5
3,901,815	-		Echvi_3298	0.32	-1.9
3,901,816	+		Echvi_3298	0.32	+0.3
3,901,816	+		Echvi_3298	0.32	-0.9
3,901,816	+		Echvi_3298	0.32	+0.5
3,901,816	+		Echvi_3298	0.32	-0.2
3,901,816	+				+1.9
3,901,817	-		Echvi_3298	0.32	-0.4
3,901,817	-		Echvi_3298	0.32	-0.2
3,901,817	-		Echvi_3298	0.32	-1.0
3,901,874	+		Echvi_3298	0.43	+0.8
3,901,875	-		Echvi_3298	0.43	+0.6
3,901,875	-		Echvi_3298	0.43	-2.5
3,901,875	-		Echvi_3298	0.43	-0.0
3,901,892	+		Echvi_3298	0.46	-1.1
3,901,893	-		Echvi_3298	0.46	+0.4
3,901,975	+		Echvi_3298	0.61	+0.4
3,901,998	+		Echvi_3298	0.65	-0.4
3,902,043	+		Echvi_3298	0.74	-1.6
3,902,044	-		Echvi_3298	0.74	-0.6
3,902,044	-		Echvi_3298	0.74	+1.1
3,902,146	-				-0.3