Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2254

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
2,671,003	-				-1.4
2,671,003	-				-1.4
2,671,074	+				+0.2
2,671,074	+				-0.4
2,671,074	+				+0.8
2,671,074	+				+0.0
2,671,075	-				+0.2
2,671,075	-				-0.3
2,671,075	-				-2.7
2,671,079	+				-0.4
2,671,082	+				-0.4
2,671,082	+				+0.2
2,671,082	+				-0.0
2,671,083	-				-1.6
2,671,106	-				+0.4
2,671,118	+				-1.8
2,671,118	+				-0.8
2,671,119	-				+0.1
2,671,119	-				+0.3
2,671,141	+				-1.9
2,671,141	+				-1.3
2,671,142	-				-0.2
2,671,147	-				+0.4
2,671,155	+				-0.2
2,671,241	+		Echvi_2253	0.17	-1.7
2,671,299	+		Echvi_2253	0.24	-0.8
2,671,300	-		Echvi_2253	0.24	+0.2
2,671,300	-		Echvi_2253	0.24	-0.6
2,671,300	-		Echvi_2253	0.24	-0.7
2,671,301	+		Echvi_2253	0.24	-0.6
2,671,301	+		Echvi_2253	0.24	+1.8
2,671,302	-		Echvi_2253	0.24	-0.5
2,671,395	+		Echvi_2253	0.34	-0.8
2,671,396	-		Echvi_2253	0.34	-1.0
2,671,396	-		Echvi_2253	0.34	-0.8
2,671,396	-		Echvi_2253	0.34	-0.2
2,671,508	+		Echvi_2253	0.46	+0.2
2,671,541	+		Echvi_2253	0.50	-0.8
2,671,542	-		Echvi_2253	0.50	+0.7
2,671,542	-		Echvi_2253	0.50	-1.6
2,671,622	+		Echvi_2253	0.59	-0.9
2,671,645	-		Echvi_2253	0.61	-0.5
2,671,670	+		Echvi_2253	0.64	-1.3
2,671,671	-		Echvi_2253	0.64	-0.2
2,671,710	-		Echvi_2253	0.68	-0.8
2,671,712	-		Echvi_2253	0.68	-1.2
2,671,745	+		Echvi_2253	0.72	-1.3
2,671,746	-		Echvi_2253	0.72	-0.6
2,671,810	+		Echvi_2253	0.79	-1.0
2,671,810	+		Echvi_2253	0.79	-0.6
2,671,850	+		Echvi_2253	0.83	-2.7
2,671,892	+		Echvi_2253	0.88	+0.2
2,671,969	+				-0.0
2,671,974	-				-0.9
2,671,978	+				-1.0
2,671,987	+				+0.1
2,671,987	+				-1.8
2,671,987	+				+0.4
2,671,988	-				-1.3
2,672,017	+				+0.1
2,672,018	-				-1.0
2,672,018	-				+0.6
2,672,024	-				+0.2
2,672,024	-				+0.1
2,672,026	-				-0.4
2,672,030	-				-0.3
2,672,072	+				-2.5
2,672,073	-				-2.0
2,672,073	-				-0.2
2,672,083	-				+0.1
2,672,083	-				+1.0
2,672,106	-		Echvi_2254	0.12	-1.0
2,672,260	+		Echvi_2254	0.30	+0.5
2,672,261	-		Echvi_2254	0.30	-1.2
2,672,316	+		Echvi_2254	0.36	-3.0
2,672,341	+		Echvi_2254	0.39	-2.6
2,672,342	-		Echvi_2254	0.39	-0.8
2,672,353	+		Echvi_2254	0.41	-2.0
2,672,354	-		Echvi_2254	0.41	-1.2
2,672,354	-		Echvi_2254	0.41	-0.2
2,672,354	-		Echvi_2254	0.41	-1.4
2,672,354	-		Echvi_2254	0.41	-1.4
2,672,609	+		Echvi_2254	0.70	-0.8
2,672,610	-		Echvi_2254	0.70	+0.6
2,672,610	-		Echvi_2254	0.70	-0.2
2,672,783	-		Echvi_2254	0.89	+0.5
2,672,837	+				+0.5
2,672,904	+				+1.2
2,672,924	+				+0.6
2,672,941	-				+0.3
2,672,945	+				+2.0
2,672,945	+				+0.7
2,672,945	+				-0.0
2,672,945	+				+0.8
2,672,945	+				+0.8
2,672,946	-				+2.6
2,672,946	-				-0.4
2,672,997	+				+1.5
2,673,335	-				+2.1
2,673,374	-				-0.7
2,673,375	+				+0.2
2,673,376	-				-1.6
2,673,415	+				+0.4
2,673,415	+				-0.0
2,673,416	-				+0.2
2,673,439	+				+1.0
2,673,467	-				+0.2
2,673,467	-				+0.1
2,673,539	-				-0.2
2,673,591	+				+0.4
2,673,670	+				+0.5
2,673,682	+				-0.2
2,673,682	+				+0.9
2,673,682	+				-0.8
2,673,683	-				-0.4
2,673,687	-				-2.7
2,673,693	-				-0.6
2,673,766	+		Echvi_2256	0.13	+0.1