Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1598

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1597 and Echvi_1598 overlap by 4 nucleotidesEchvi_1598 and Echvi_1599 are separated by 36 nucleotides Echvi_1597: Echvi_1597 - Transglutaminase-like enzymes, putative cysteine proteases, at 1,837,317 to 1,839,161 _1597 Echvi_1598: Echvi_1598 - Transglutaminase-like superfamily., at 1,839,158 to 1,841,122 _1598 Echvi_1599: Echvi_1599 - Superfamily II DNA and RNA helicases, at 1,841,159 to 1,842,475 _1599 Position (kb) 1839 1840 1841 1842Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1838.169 kb on + strand, within Echvi_1597at 1838.191 kb on - strand, within Echvi_1597at 1838.200 kb on + strand, within Echvi_1597at 1838.200 kb on + strand, within Echvi_1597at 1838.200 kb on + strand, within Echvi_1597at 1838.200 kb on + strand, within Echvi_1597at 1838.201 kb on - strand, within Echvi_1597at 1838.201 kb on - strand, within Echvi_1597at 1838.201 kb on - strand, within Echvi_1597at 1838.201 kb on - strand, within Echvi_1597at 1838.201 kb on - strand, within Echvi_1597at 1838.201 kb on - strand, within Echvi_1597at 1838.201 kb on - strand, within Echvi_1597at 1838.322 kb on - strand, within Echvi_1597at 1838.335 kb on - strand, within Echvi_1597at 1838.335 kb on - strand, within Echvi_1597at 1838.414 kb on - strand, within Echvi_1597at 1838.557 kb on - strand, within Echvi_1597at 1838.572 kb on - strand, within Echvi_1597at 1838.674 kb on + strand, within Echvi_1597at 1838.674 kb on + strand, within Echvi_1597at 1838.674 kb on + strand, within Echvi_1597at 1838.675 kb on - strand, within Echvi_1597at 1838.675 kb on - strand, within Echvi_1597at 1838.675 kb on - strand, within Echvi_1597at 1838.675 kb on - strand, within Echvi_1597at 1838.675 kb on - strand, within Echvi_1597at 1838.677 kb on - strand, within Echvi_1597at 1838.715 kb on + strand, within Echvi_1597at 1838.752 kb on + strand, within Echvi_1597at 1838.752 kb on + strand, within Echvi_1597at 1838.752 kb on + strand, within Echvi_1597at 1838.753 kb on - strand, within Echvi_1597at 1838.773 kb on + strand, within Echvi_1597at 1838.774 kb on - strand, within Echvi_1597at 1838.783 kb on + strand, within Echvi_1597at 1838.796 kb on - strand, within Echvi_1597at 1838.796 kb on - strand, within Echvi_1597at 1838.796 kb on - strand, within Echvi_1597at 1838.806 kb on + strand, within Echvi_1597at 1838.806 kb on + strand, within Echvi_1597at 1838.836 kb on - strand, within Echvi_1597at 1838.836 kb on - strand, within Echvi_1597at 1839.009 kb on + strandat 1839.216 kb on + strandat 1839.217 kb on - strandat 1839.280 kb on + strandat 1839.281 kb on - strandat 1839.321 kb on + strandat 1839.322 kb on - strandat 1839.322 kb on - strandat 1839.324 kb on + strandat 1839.325 kb on - strandat 1839.376 kb on + strand, within Echvi_1598at 1839.427 kb on + strand, within Echvi_1598at 1839.428 kb on - strand, within Echvi_1598at 1839.428 kb on - strand, within Echvi_1598at 1839.431 kb on - strand, within Echvi_1598at 1839.435 kb on + strand, within Echvi_1598at 1839.440 kb on + strand, within Echvi_1598at 1839.440 kb on + strand, within Echvi_1598at 1839.441 kb on - strand, within Echvi_1598at 1839.441 kb on - strand, within Echvi_1598at 1839.443 kb on + strand, within Echvi_1598at 1839.443 kb on + strand, within Echvi_1598at 1839.443 kb on + strand, within Echvi_1598at 1839.443 kb on + strand, within Echvi_1598at 1839.443 kb on + strand, within Echvi_1598at 1839.444 kb on - strand, within Echvi_1598at 1839.444 kb on - strand, within Echvi_1598at 1839.444 kb on - strand, within Echvi_1598at 1839.444 kb on - strand, within Echvi_1598at 1839.447 kb on + strand, within Echvi_1598at 1839.447 kb on + strand, within Echvi_1598at 1839.593 kb on - strand, within Echvi_1598at 1839.636 kb on - strand, within Echvi_1598at 1839.644 kb on + strand, within Echvi_1598at 1839.645 kb on - strand, within Echvi_1598at 1839.857 kb on + strand, within Echvi_1598at 1839.857 kb on + strand, within Echvi_1598at 1839.859 kb on + strand, within Echvi_1598at 1839.859 kb on + strand, within Echvi_1598at 1839.859 kb on + strand, within Echvi_1598at 1839.860 kb on - strand, within Echvi_1598at 1839.878 kb on + strand, within Echvi_1598at 1839.891 kb on + strand, within Echvi_1598at 1839.911 kb on + strand, within Echvi_1598at 1839.912 kb on - strand, within Echvi_1598at 1839.922 kb on + strand, within Echvi_1598at 1839.923 kb on - strand, within Echvi_1598at 1839.938 kb on + strand, within Echvi_1598at 1839.938 kb on + strand, within Echvi_1598at 1839.938 kb on + strand, within Echvi_1598at 1839.947 kb on + strand, within Echvi_1598at 1839.948 kb on - strand, within Echvi_1598at 1839.981 kb on + strand, within Echvi_1598at 1840.008 kb on - strand, within Echvi_1598at 1840.008 kb on - strand, within Echvi_1598at 1840.018 kb on + strand, within Echvi_1598at 1840.023 kb on + strand, within Echvi_1598at 1840.023 kb on + strand, within Echvi_1598at 1840.024 kb on - strand, within Echvi_1598at 1840.082 kb on + strand, within Echvi_1598at 1840.082 kb on + strand, within Echvi_1598at 1840.083 kb on - strand, within Echvi_1598at 1840.084 kb on + strand, within Echvi_1598at 1840.084 kb on + strand, within Echvi_1598at 1840.084 kb on + strand, within Echvi_1598at 1840.084 kb on + strand, within Echvi_1598at 1840.084 kb on + strand, within Echvi_1598at 1840.084 kb on + strand, within Echvi_1598at 1840.084 kb on + strand, within Echvi_1598at 1840.085 kb on - strand, within Echvi_1598at 1840.085 kb on - strand, within Echvi_1598at 1840.085 kb on - strand, within Echvi_1598at 1840.085 kb on - strand, within Echvi_1598at 1840.085 kb on - strand, within Echvi_1598at 1840.085 kb on - strand, within Echvi_1598at 1840.085 kb on - strand, within Echvi_1598at 1840.085 kb on - strand, within Echvi_1598at 1840.089 kb on - strand, within Echvi_1598at 1840.089 kb on - strand, within Echvi_1598at 1840.089 kb on - strand, within Echvi_1598at 1840.094 kb on + strand, within Echvi_1598at 1840.096 kb on + strand, within Echvi_1598at 1840.096 kb on + strand, within Echvi_1598at 1840.096 kb on + strand, within Echvi_1598at 1840.097 kb on - strand, within Echvi_1598at 1840.097 kb on - strand, within Echvi_1598at 1840.105 kb on + strand, within Echvi_1598at 1840.106 kb on - strand, within Echvi_1598at 1840.106 kb on - strand, within Echvi_1598at 1840.171 kb on + strand, within Echvi_1598at 1840.195 kb on - strand, within Echvi_1598at 1840.218 kb on + strand, within Echvi_1598at 1840.281 kb on - strand, within Echvi_1598at 1840.281 kb on - strand, within Echvi_1598at 1840.321 kb on - strand, within Echvi_1598at 1840.326 kb on + strand, within Echvi_1598at 1840.346 kb on - strand, within Echvi_1598at 1840.353 kb on + strand, within Echvi_1598at 1840.353 kb on + strand, within Echvi_1598at 1840.392 kb on - strand, within Echvi_1598at 1840.396 kb on - strand, within Echvi_1598at 1840.504 kb on + strand, within Echvi_1598at 1840.520 kb on - strand, within Echvi_1598at 1840.529 kb on + strand, within Echvi_1598at 1840.530 kb on - strand, within Echvi_1598at 1840.530 kb on - strand, within Echvi_1598at 1840.530 kb on - strand, within Echvi_1598at 1840.532 kb on - strand, within Echvi_1598at 1840.679 kb on + strand, within Echvi_1598at 1840.696 kb on + strand, within Echvi_1598at 1840.697 kb on - strand, within Echvi_1598at 1840.823 kb on + strand, within Echvi_1598at 1840.824 kb on - strand, within Echvi_1598at 1840.824 kb on - strand, within Echvi_1598at 1840.841 kb on + strand, within Echvi_1598at 1840.841 kb on + strand, within Echvi_1598at 1840.842 kb on - strand, within Echvi_1598at 1840.842 kb on - strand, within Echvi_1598at 1840.842 kb on - strand, within Echvi_1598at 1840.844 kb on - strand, within Echvi_1598at 1840.844 kb on - strand, within Echvi_1598at 1840.938 kb on - strandat 1840.938 kb on - strandat 1841.053 kb on + strandat 1841.120 kb on + strandat 1841.121 kb on - strandat 1841.174 kb on + strandat 1841.174 kb on + strandat 1841.175 kb on - strandat 1841.257 kb on - strandat 1841.274 kb on - strandat 1841.464 kb on - strand, within Echvi_1599at 1841.464 kb on - strand, within Echvi_1599at 1841.489 kb on - strand, within Echvi_1599at 1841.539 kb on - strand, within Echvi_1599at 1841.539 kb on - strand, within Echvi_1599at 1841.539 kb on - strand, within Echvi_1599at 1841.539 kb on - strand, within Echvi_1599at 1841.539 kb on - strand, within Echvi_1599at 1841.577 kb on + strand, within Echvi_1599at 1841.578 kb on - strand, within Echvi_1599at 1841.698 kb on + strand, within Echvi_1599at 1841.699 kb on - strand, within Echvi_1599at 1841.742 kb on - strand, within Echvi_1599at 1841.744 kb on - strand, within Echvi_1599at 1841.744 kb on - strand, within Echvi_1599at 1841.774 kb on + strand, within Echvi_1599at 1841.775 kb on - strand, within Echvi_1599at 1841.929 kb on - strand, within Echvi_1599at 1841.939 kb on + strand, within Echvi_1599at 1841.984 kb on + strand, within Echvi_1599at 1842.000 kb on + strand, within Echvi_1599at 1842.001 kb on - strand, within Echvi_1599

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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1,838,169 + Echvi_1597 0.46 -0.7
1,838,191 - Echvi_1597 0.47 +0.6
1,838,200 + Echvi_1597 0.48 +1.7
1,838,200 + Echvi_1597 0.48 +0.1
1,838,200 + Echvi_1597 0.48 +0.0
1,838,200 + Echvi_1597 0.48 -1.8
1,838,201 - Echvi_1597 0.48 -1.7
1,838,201 - Echvi_1597 0.48 -0.3
1,838,201 - Echvi_1597 0.48 -0.9
1,838,201 - Echvi_1597 0.48 -0.2
1,838,201 - Echvi_1597 0.48 -0.7
1,838,201 - Echvi_1597 0.48 +1.4
1,838,201 - Echvi_1597 0.48 -1.8
1,838,322 - Echvi_1597 0.54 -2.3
1,838,335 - Echvi_1597 0.55 -0.7
1,838,335 - Echvi_1597 0.55 +0.9
1,838,414 - Echvi_1597 0.59 -0.2
1,838,557 - Echvi_1597 0.67 -0.2
1,838,572 - Echvi_1597 0.68 +0.9
1,838,674 + Echvi_1597 0.74 -0.7
1,838,674 + Echvi_1597 0.74 +0.8
1,838,674 + Echvi_1597 0.74 -1.2
1,838,675 - Echvi_1597 0.74 -0.2
1,838,675 - Echvi_1597 0.74 +1.1
1,838,675 - Echvi_1597 0.74 +0.9
1,838,675 - Echvi_1597 0.74 +1.5
1,838,675 - Echvi_1597 0.74 -1.3
1,838,677 - Echvi_1597 0.74 -0.2
1,838,715 + Echvi_1597 0.76 -0.5
1,838,752 + Echvi_1597 0.78 -0.4
1,838,752 + Echvi_1597 0.78 -1.4
1,838,752 + Echvi_1597 0.78 +0.1
1,838,753 - Echvi_1597 0.78 +0.0
1,838,773 + Echvi_1597 0.79 +0.7
1,838,774 - Echvi_1597 0.79 -0.3
1,838,783 + Echvi_1597 0.79 +0.6
1,838,796 - Echvi_1597 0.80 -1.0
1,838,796 - Echvi_1597 0.80 +0.2
1,838,796 - Echvi_1597 0.80 +0.2
1,838,806 + Echvi_1597 0.81 +0.7
1,838,806 + Echvi_1597 0.81 +0.6
1,838,836 - Echvi_1597 0.82 +0.4
1,838,836 - Echvi_1597 0.82 +0.1
1,839,009 + +0.9
1,839,216 + +0.7
1,839,217 - -0.3
1,839,280 + -0.3
1,839,281 - -1.4
1,839,321 + -0.6
1,839,322 - -0.4
1,839,322 - -1.1
1,839,324 + +0.2
1,839,325 - -0.2
1,839,376 + Echvi_1598 0.11 -1.9
1,839,427 + Echvi_1598 0.14 -0.0
1,839,428 - Echvi_1598 0.14 +0.0
1,839,428 - Echvi_1598 0.14 +1.9
1,839,431 - Echvi_1598 0.14 -0.3
1,839,435 + Echvi_1598 0.14 +1.7
1,839,440 + Echvi_1598 0.14 -2.2
1,839,440 + Echvi_1598 0.14 -1.1
1,839,441 - Echvi_1598 0.14 -0.4
1,839,441 - Echvi_1598 0.14 -0.5
1,839,443 + Echvi_1598 0.15 +1.0
1,839,443 + Echvi_1598 0.15 +1.1
1,839,443 + Echvi_1598 0.15 -0.2
1,839,443 + Echvi_1598 0.15 -0.9
1,839,443 + Echvi_1598 0.15 +0.3
1,839,444 - Echvi_1598 0.15 -2.8
1,839,444 - Echvi_1598 0.15 +1.3
1,839,444 - Echvi_1598 0.15 +0.1
1,839,444 - Echvi_1598 0.15 -0.4
1,839,447 + Echvi_1598 0.15 +2.3
1,839,447 + Echvi_1598 0.15 -0.3
1,839,593 - Echvi_1598 0.22 -0.4
1,839,636 - Echvi_1598 0.24 -0.3
1,839,644 + Echvi_1598 0.25 -0.8
1,839,645 - Echvi_1598 0.25 +0.3
1,839,857 + Echvi_1598 0.36 +0.9
1,839,857 + Echvi_1598 0.36 -0.6
1,839,859 + Echvi_1598 0.36 -0.3
1,839,859 + Echvi_1598 0.36 -0.1
1,839,859 + Echvi_1598 0.36 -0.1
1,839,860 - Echvi_1598 0.36 -1.7
1,839,878 + Echvi_1598 0.37 -1.2
1,839,891 + Echvi_1598 0.37 +0.1
1,839,911 + Echvi_1598 0.38 +0.1
1,839,912 - Echvi_1598 0.38 -0.1
1,839,922 + Echvi_1598 0.39 -0.8
1,839,923 - Echvi_1598 0.39 -3.4
1,839,938 + Echvi_1598 0.40 +0.5
1,839,938 + Echvi_1598 0.40 -0.1
1,839,938 + Echvi_1598 0.40 +1.1
1,839,947 + Echvi_1598 0.40 -0.2
1,839,948 - Echvi_1598 0.40 -0.1
1,839,981 + Echvi_1598 0.42 -0.1
1,840,008 - Echvi_1598 0.43 +0.2
1,840,008 - Echvi_1598 0.43 -1.7
1,840,018 + Echvi_1598 0.44 +0.9
1,840,023 + Echvi_1598 0.44 -1.4
1,840,023 + Echvi_1598 0.44 -1.3
1,840,024 - Echvi_1598 0.44 +0.7
1,840,082 + Echvi_1598 0.47 -1.3
1,840,082 + Echvi_1598 0.47 +0.9
1,840,083 - Echvi_1598 0.47 -0.3
1,840,084 + Echvi_1598 0.47 -0.2
1,840,084 + Echvi_1598 0.47 +0.6
1,840,084 + Echvi_1598 0.47 -1.4
1,840,084 + Echvi_1598 0.47 +1.3
1,840,084 + Echvi_1598 0.47 -1.2
1,840,084 + Echvi_1598 0.47 -0.1
1,840,084 + Echvi_1598 0.47 -0.6
1,840,085 - Echvi_1598 0.47 +0.4
1,840,085 - Echvi_1598 0.47 -0.8
1,840,085 - Echvi_1598 0.47 -0.7
1,840,085 - Echvi_1598 0.47 -0.2
1,840,085 - Echvi_1598 0.47 -2.0
1,840,085 - Echvi_1598 0.47 -1.8
1,840,085 - Echvi_1598 0.47 -1.4
1,840,085 - Echvi_1598 0.47 -1.1
1,840,089 - Echvi_1598 0.47 -0.1
1,840,089 - Echvi_1598 0.47 -0.9
1,840,089 - Echvi_1598 0.47 +1.9
1,840,094 + Echvi_1598 0.48 +0.4
1,840,096 + Echvi_1598 0.48 -0.9
1,840,096 + Echvi_1598 0.48 -0.0
1,840,096 + Echvi_1598 0.48 +0.9
1,840,097 - Echvi_1598 0.48 +0.7
1,840,097 - Echvi_1598 0.48 +0.5
1,840,105 + Echvi_1598 0.48 -1.1
1,840,106 - Echvi_1598 0.48 +1.0
1,840,106 - Echvi_1598 0.48 -0.2
1,840,171 + Echvi_1598 0.52 +0.3
1,840,195 - Echvi_1598 0.53 -0.3
1,840,218 + Echvi_1598 0.54 +0.0
1,840,281 - Echvi_1598 0.57 -1.1
1,840,281 - Echvi_1598 0.57 +0.4
1,840,321 - Echvi_1598 0.59 -2.3
1,840,326 + Echvi_1598 0.59 -0.4
1,840,346 - Echvi_1598 0.60 +0.6
1,840,353 + Echvi_1598 0.61 -0.2
1,840,353 + Echvi_1598 0.61 +0.0
1,840,392 - Echvi_1598 0.63 -1.0
1,840,396 - Echvi_1598 0.63 -1.4
1,840,504 + Echvi_1598 0.68 -1.5
1,840,520 - Echvi_1598 0.69 -0.4
1,840,529 + Echvi_1598 0.70 +2.7
1,840,530 - Echvi_1598 0.70 +0.3
1,840,530 - Echvi_1598 0.70 -0.3
1,840,530 - Echvi_1598 0.70 -0.6
1,840,532 - Echvi_1598 0.70 -0.8
1,840,679 + Echvi_1598 0.77 +2.3
1,840,696 + Echvi_1598 0.78 +0.6
1,840,697 - Echvi_1598 0.78 +0.1
1,840,823 + Echvi_1598 0.85 +1.7
1,840,824 - Echvi_1598 0.85 -1.4
1,840,824 - Echvi_1598 0.85 -1.0
1,840,841 + Echvi_1598 0.86 +0.3
1,840,841 + Echvi_1598 0.86 +0.4
1,840,842 - Echvi_1598 0.86 -1.0
1,840,842 - Echvi_1598 0.86 -1.5
1,840,842 - Echvi_1598 0.86 +0.2
1,840,844 - Echvi_1598 0.86 -2.1
1,840,844 - Echvi_1598 0.86 -0.1
1,840,938 - -0.1
1,840,938 - +1.0
1,841,053 + -2.1
1,841,120 + -0.2
1,841,121 - -0.6
1,841,174 + +0.1
1,841,174 + -0.7
1,841,175 - +0.4
1,841,257 - +0.0
1,841,274 - -1.2
1,841,464 - Echvi_1599 0.23 -1.7
1,841,464 - Echvi_1599 0.23 -2.0
1,841,489 - Echvi_1599 0.25 -0.3
1,841,539 - Echvi_1599 0.29 -1.0
1,841,539 - Echvi_1599 0.29 +0.1
1,841,539 - Echvi_1599 0.29 +0.2
1,841,539 - Echvi_1599 0.29 -1.0
1,841,539 - Echvi_1599 0.29 +0.1
1,841,577 + Echvi_1599 0.32 +1.2
1,841,578 - Echvi_1599 0.32 -0.4
1,841,698 + Echvi_1599 0.41 +0.3
1,841,699 - Echvi_1599 0.41 -2.7
1,841,742 - Echvi_1599 0.44 +0.3
1,841,744 - Echvi_1599 0.44 -2.4
1,841,744 - Echvi_1599 0.44 +0.4
1,841,774 + Echvi_1599 0.47 +0.6
1,841,775 - Echvi_1599 0.47 -0.0
1,841,929 - Echvi_1599 0.58 -1.8
1,841,939 + Echvi_1599 0.59 +1.4
1,841,984 + Echvi_1599 0.63 +0.1
1,842,000 + Echvi_1599 0.64 -1.0
1,842,001 - Echvi_1599 0.64 +0.5

Or see this region's nucleotide sequence