Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0805

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0803 and Echvi_0804 are separated by 228 nucleotidesEchvi_0804 and Echvi_0805 are separated by 33 nucleotidesEchvi_0805 and Echvi_0806 are separated by 321 nucleotides Echvi_0803: Echvi_0803 - ABC-type transport system involved in cytochrome c biogenesis, permease component, at 914,570 to 915,244 _0803 Echvi_0804: Echvi_0804 - ABC-type transport system involved in cytochrome c biogenesis, permease component, at 915,473 to 916,138 _0804 Echvi_0805: Echvi_0805 - Thiol-disulfide isomerase and thioredoxins, at 916,172 to 917,713 _0805 Echvi_0806: Echvi_0806 - seryl-tRNA synthetase, at 918,035 to 919,315 _0806 Position (kb) 916 917 918Strain fitness (log2 ratio) -2 -1 0 1 2 3at 915.367 kb on - strandat 915.425 kb on - strandat 915.458 kb on + strandat 915.475 kb on - strandat 916.151 kb on - strandat 916.171 kb on - strandat 916.171 kb on - strandat 916.176 kb on + strandat 916.179 kb on + strandat 916.180 kb on - strandat 916.203 kb on - strandat 916.222 kb on - strandat 916.222 kb on - strandat 916.256 kb on + strandat 916.257 kb on - strandat 916.314 kb on + strandat 916.329 kb on + strand, within Echvi_0805at 916.377 kb on + strand, within Echvi_0805at 916.378 kb on - strand, within Echvi_0805at 916.409 kb on - strand, within Echvi_0805at 916.410 kb on + strand, within Echvi_0805at 916.410 kb on + strand, within Echvi_0805at 916.411 kb on - strand, within Echvi_0805at 916.411 kb on - strand, within Echvi_0805at 916.416 kb on + strand, within Echvi_0805at 916.416 kb on + strand, within Echvi_0805at 916.416 kb on + strandat 916.416 kb on + strand, within Echvi_0805at 916.416 kb on + strand, within Echvi_0805at 916.416 kb on + strand, within Echvi_0805at 916.417 kb on - strand, within Echvi_0805at 916.417 kb on - strand, within Echvi_0805at 916.417 kb on - strand, within Echvi_0805at 916.417 kb on - strand, within Echvi_0805at 916.417 kb on - strand, within Echvi_0805at 916.417 kb on - strand, within Echvi_0805at 916.418 kb on + strand, within Echvi_0805at 916.418 kb on + strand, within Echvi_0805at 916.419 kb on - strand, within Echvi_0805at 916.419 kb on - strand, within Echvi_0805at 916.419 kb on - strand, within Echvi_0805at 916.419 kb on - strand, within Echvi_0805at 916.529 kb on + strand, within Echvi_0805at 916.529 kb on + strand, within Echvi_0805at 916.529 kb on + strand, within Echvi_0805at 916.529 kb on + strand, within Echvi_0805at 916.529 kb on + strand, within Echvi_0805at 916.530 kb on - strand, within Echvi_0805at 916.536 kb on + strand, within Echvi_0805at 916.537 kb on - strand, within Echvi_0805at 916.549 kb on + strand, within Echvi_0805at 916.549 kb on + strand, within Echvi_0805at 916.574 kb on + strand, within Echvi_0805at 916.574 kb on + strand, within Echvi_0805at 916.575 kb on - strand, within Echvi_0805at 916.597 kb on - strand, within Echvi_0805at 916.597 kb on - strand, within Echvi_0805at 916.608 kb on + strand, within Echvi_0805at 916.609 kb on - strand, within Echvi_0805at 916.683 kb on + strand, within Echvi_0805at 916.733 kb on - strand, within Echvi_0805at 916.755 kb on - strand, within Echvi_0805at 916.794 kb on + strand, within Echvi_0805at 916.794 kb on + strand, within Echvi_0805at 916.794 kb on + strand, within Echvi_0805at 916.795 kb on - strand, within Echvi_0805at 916.795 kb on - strand, within Echvi_0805at 916.795 kb on - strand, within Echvi_0805at 916.795 kb on - strand, within Echvi_0805at 916.795 kb on - strand, within Echvi_0805at 916.815 kb on + strand, within Echvi_0805at 916.827 kb on + strand, within Echvi_0805at 916.828 kb on - strand, within Echvi_0805at 916.828 kb on - strand, within Echvi_0805at 916.846 kb on + strand, within Echvi_0805at 916.846 kb on + strand, within Echvi_0805at 916.846 kb on + strand, within Echvi_0805at 916.847 kb on - strand, within Echvi_0805at 916.847 kb on - strand, within Echvi_0805at 916.847 kb on - strand, within Echvi_0805at 916.847 kb on - strand, within Echvi_0805at 916.850 kb on + strand, within Echvi_0805at 916.850 kb on + strand, within Echvi_0805at 916.850 kb on + strand, within Echvi_0805at 916.850 kb on + strand, within Echvi_0805at 916.850 kb on + strand, within Echvi_0805at 916.850 kb on + strand, within Echvi_0805at 916.851 kb on - strand, within Echvi_0805at 916.851 kb on - strand, within Echvi_0805at 916.851 kb on - strand, within Echvi_0805at 916.851 kb on - strand, within Echvi_0805at 916.851 kb on - strand, within Echvi_0805at 916.851 kb on - strand, within Echvi_0805at 916.851 kb on - strand, within Echvi_0805at 916.851 kb on - strand, within Echvi_0805at 916.851 kb on - strand, within Echvi_0805at 916.851 kb on - strand, within Echvi_0805at 916.859 kb on + strand, within Echvi_0805at 916.859 kb on + strand, within Echvi_0805at 916.859 kb on + strand, within Echvi_0805at 916.862 kb on + strand, within Echvi_0805at 916.862 kb on + strand, within Echvi_0805at 916.862 kb on + strand, within Echvi_0805at 916.918 kb on + strand, within Echvi_0805at 916.918 kb on + strand, within Echvi_0805at 916.918 kb on + strand, within Echvi_0805at 916.921 kb on - strand, within Echvi_0805at 916.921 kb on - strand, within Echvi_0805at 916.921 kb on - strand, within Echvi_0805at 916.929 kb on - strand, within Echvi_0805at 916.996 kb on + strand, within Echvi_0805at 917.018 kb on - strand, within Echvi_0805at 917.127 kb on + strand, within Echvi_0805at 917.136 kb on - strand, within Echvi_0805at 917.168 kb on - strandat 917.172 kb on - strand, within Echvi_0805at 917.201 kb on + strand, within Echvi_0805at 917.201 kb on + strand, within Echvi_0805at 917.210 kb on + strand, within Echvi_0805at 917.210 kb on + strand, within Echvi_0805at 917.210 kb on + strand, within Echvi_0805at 917.211 kb on - strand, within Echvi_0805at 917.211 kb on - strand, within Echvi_0805at 917.240 kb on - strand, within Echvi_0805at 917.240 kb on - strand, within Echvi_0805at 917.247 kb on - strand, within Echvi_0805at 917.369 kb on + strand, within Echvi_0805at 917.370 kb on - strand, within Echvi_0805at 917.466 kb on + strand, within Echvi_0805at 917.475 kb on - strand, within Echvi_0805at 917.475 kb on - strand, within Echvi_0805at 917.475 kb on - strand, within Echvi_0805at 917.544 kb on + strand, within Echvi_0805at 917.544 kb on + strand, within Echvi_0805at 917.545 kb on - strand, within Echvi_0805at 917.552 kb on + strand, within Echvi_0805at 917.552 kb on + strand, within Echvi_0805at 917.552 kb on + strand, within Echvi_0805at 917.552 kb on + strand, within Echvi_0805at 917.552 kb on + strand, within Echvi_0805at 917.552 kb on + strand, within Echvi_0805at 917.553 kb on - strand, within Echvi_0805at 917.554 kb on + strand, within Echvi_0805at 917.554 kb on + strand, within Echvi_0805at 917.591 kb on + strandat 917.592 kb on - strandat 917.605 kb on + strandat 917.616 kb on - strandat 917.619 kb on + strandat 917.619 kb on + strandat 917.620 kb on - strandat 917.620 kb on - strandat 917.642 kb on - strandat 917.737 kb on + strandat 917.791 kb on - strandat 917.791 kb on - strandat 917.791 kb on - strandat 917.863 kb on - strandat 917.925 kb on + strandat 917.925 kb on + strandat 917.925 kb on + strandat 917.940 kb on + strandat 917.941 kb on - strandat 917.979 kb on - strandat 918.012 kb on + strandat 918.012 kb on + strandat 918.012 kb on + strandat 918.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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915,367 - +1.5
915,425 - -0.7
915,458 + +0.9
915,475 - -0.0
916,151 - -1.4
916,171 - -0.4
916,171 - -1.3
916,176 + +3.2
916,179 + -1.1
916,180 - +0.7
916,203 - +0.3
916,222 - -2.2
916,222 - -1.1
916,256 + +0.4
916,257 - +0.1
916,314 + -1.8
916,329 + Echvi_0805 0.10 +0.4
916,377 + Echvi_0805 0.13 +0.7
916,378 - Echvi_0805 0.13 -1.0
916,409 - Echvi_0805 0.15 -0.6
916,410 + Echvi_0805 0.15 +0.3
916,410 + Echvi_0805 0.15 +1.1
916,411 - Echvi_0805 0.15 -0.4
916,411 - Echvi_0805 0.15 -1.1
916,416 + Echvi_0805 0.16 +1.7
916,416 + Echvi_0805 0.16 -1.3
916,416 + +0.7
916,416 + Echvi_0805 0.16 +1.5
916,416 + Echvi_0805 0.16 +1.3
916,416 + Echvi_0805 0.16 +2.2
916,417 - Echvi_0805 0.16 +0.1
916,417 - Echvi_0805 0.16 -0.3
916,417 - Echvi_0805 0.16 -1.1
916,417 - Echvi_0805 0.16 +0.4
916,417 - Echvi_0805 0.16 +1.7
916,417 - Echvi_0805 0.16 -1.0
916,418 + Echvi_0805 0.16 -0.3
916,418 + Echvi_0805 0.16 +1.1
916,419 - Echvi_0805 0.16 +0.0
916,419 - Echvi_0805 0.16 +1.4
916,419 - Echvi_0805 0.16 +0.1
916,419 - Echvi_0805 0.16 -0.3
916,529 + Echvi_0805 0.23 -0.2
916,529 + Echvi_0805 0.23 +0.7
916,529 + Echvi_0805 0.23 -0.9
916,529 + Echvi_0805 0.23 -0.4
916,529 + Echvi_0805 0.23 -0.3
916,530 - Echvi_0805 0.23 -1.1
916,536 + Echvi_0805 0.24 -0.9
916,537 - Echvi_0805 0.24 +1.1
916,549 + Echvi_0805 0.24 -0.7
916,549 + Echvi_0805 0.24 -0.1
916,574 + Echvi_0805 0.26 +1.0
916,574 + Echvi_0805 0.26 +3.2
916,575 - Echvi_0805 0.26 -0.7
916,597 - Echvi_0805 0.28 -0.5
916,597 - Echvi_0805 0.28 -0.1
916,608 + Echvi_0805 0.28 +0.7
916,609 - Echvi_0805 0.28 +0.7
916,683 + Echvi_0805 0.33 +2.0
916,733 - Echvi_0805 0.36 -0.7
916,755 - Echvi_0805 0.38 +0.6
916,794 + Echvi_0805 0.40 +1.0
916,794 + Echvi_0805 0.40 +1.3
916,794 + Echvi_0805 0.40 -0.3
916,795 - Echvi_0805 0.40 -0.8
916,795 - Echvi_0805 0.40 +0.1
916,795 - Echvi_0805 0.40 -1.8
916,795 - Echvi_0805 0.40 +1.0
916,795 - Echvi_0805 0.40 +0.3
916,815 + Echvi_0805 0.42 -0.7
916,827 + Echvi_0805 0.42 +2.1
916,828 - Echvi_0805 0.43 -0.4
916,828 - Echvi_0805 0.43 -0.4
916,846 + Echvi_0805 0.44 +0.7
916,846 + Echvi_0805 0.44 +0.8
916,846 + Echvi_0805 0.44 +0.7
916,847 - Echvi_0805 0.44 +1.0
916,847 - Echvi_0805 0.44 -0.4
916,847 - Echvi_0805 0.44 -1.1
916,847 - Echvi_0805 0.44 -2.3
916,850 + Echvi_0805 0.44 +0.9
916,850 + Echvi_0805 0.44 +0.9
916,850 + Echvi_0805 0.44 +0.4
916,850 + Echvi_0805 0.44 -0.9
916,850 + Echvi_0805 0.44 -0.7
916,850 + Echvi_0805 0.44 -1.5
916,851 - Echvi_0805 0.44 -1.7
916,851 - Echvi_0805 0.44 -0.6
916,851 - Echvi_0805 0.44 -0.9
916,851 - Echvi_0805 0.44 +0.5
916,851 - Echvi_0805 0.44 +0.6
916,851 - Echvi_0805 0.44 +0.4
916,851 - Echvi_0805 0.44 +0.5
916,851 - Echvi_0805 0.44 -0.9
916,851 - Echvi_0805 0.44 +0.5
916,851 - Echvi_0805 0.44 +0.1
916,859 + Echvi_0805 0.45 +0.1
916,859 + Echvi_0805 0.45 +0.4
916,859 + Echvi_0805 0.45 +0.3
916,862 + Echvi_0805 0.45 +1.0
916,862 + Echvi_0805 0.45 +0.6
916,862 + Echvi_0805 0.45 -2.2
916,918 + Echvi_0805 0.48 +0.6
916,918 + Echvi_0805 0.48 -0.7
916,918 + Echvi_0805 0.48 +0.7
916,921 - Echvi_0805 0.49 -0.3
916,921 - Echvi_0805 0.49 -0.8
916,921 - Echvi_0805 0.49 +0.6
916,929 - Echvi_0805 0.49 +1.0
916,996 + Echvi_0805 0.53 +0.8
917,018 - Echvi_0805 0.55 -0.0
917,127 + Echvi_0805 0.62 -0.1
917,136 - Echvi_0805 0.63 +0.8
917,168 - +3.1
917,172 - Echvi_0805 0.65 -0.0
917,201 + Echvi_0805 0.67 +0.4
917,201 + Echvi_0805 0.67 +0.4
917,210 + Echvi_0805 0.67 +0.1
917,210 + Echvi_0805 0.67 +1.1
917,210 + Echvi_0805 0.67 -0.3
917,211 - Echvi_0805 0.67 +0.6
917,211 - Echvi_0805 0.67 -0.0
917,240 - Echvi_0805 0.69 -0.6
917,240 - Echvi_0805 0.69 -0.7
917,247 - Echvi_0805 0.70 -0.3
917,369 + Echvi_0805 0.78 +0.5
917,370 - Echvi_0805 0.78 -0.3
917,466 + Echvi_0805 0.84 -0.3
917,475 - Echvi_0805 0.85 -0.0
917,475 - Echvi_0805 0.85 -0.5
917,475 - Echvi_0805 0.85 -1.9
917,544 + Echvi_0805 0.89 +0.6
917,544 + Echvi_0805 0.89 +1.0
917,545 - Echvi_0805 0.89 -0.3
917,552 + Echvi_0805 0.89 +1.5
917,552 + Echvi_0805 0.89 -0.1
917,552 + Echvi_0805 0.89 +0.7
917,552 + Echvi_0805 0.89 +0.2
917,552 + Echvi_0805 0.89 +1.7
917,552 + Echvi_0805 0.89 +1.1
917,553 - Echvi_0805 0.90 +0.3
917,554 + Echvi_0805 0.90 +0.9
917,554 + Echvi_0805 0.90 +0.8
917,591 + +1.3
917,592 - -0.7
917,605 + +1.4
917,616 - +0.1
917,619 + -0.3
917,619 + +0.2
917,620 - +1.7
917,620 - +0.9
917,642 - -0.3
917,737 + +0.2
917,791 - -0.8
917,791 - +0.9
917,791 - +0.1
917,863 - +0.4
917,925 + -1.1
917,925 + -0.3
917,925 + -0.8
917,940 + -0.3
917,941 - +1.3
917,979 - +0.1
918,012 + +1.7
918,012 + +0.1
918,012 + +1.0
918,013 - -0.2

Or see this region's nucleotide sequence