Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0781

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0780 and Echvi_0781 are separated by 3 nucleotidesEchvi_0781 and Echvi_0782 are separated by 2 nucleotides Echvi_0780: Echvi_0780 - DNA mismatch repair protein MutL, at 879,937 to 881,808 _0780 Echvi_0781: Echvi_0781 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 881,812 to 882,603 _0781 Echvi_0782: Echvi_0782 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 882,606 to 883,526 _0782 Position (kb) 881 882 883Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 881.809 kb on + strandat 881.811 kb on + strandat 881.811 kb on + strandat 881.817 kb on + strandat 881.817 kb on + strandat 881.817 kb on + strandat 881.818 kb on - strandat 881.846 kb on + strandat 881.846 kb on + strandat 881.869 kb on + strandat 881.869 kb on + strandat 881.869 kb on + strandat 881.870 kb on - strandat 881.870 kb on - strandat 881.874 kb on - strandat 881.920 kb on + strand, within Echvi_0781at 881.923 kb on + strand, within Echvi_0781at 881.923 kb on + strand, within Echvi_0781at 881.925 kb on + strand, within Echvi_0781at 881.974 kb on - strand, within Echvi_0781at 882.006 kb on + strand, within Echvi_0781at 882.007 kb on - strand, within Echvi_0781at 882.017 kb on + strand, within Echvi_0781at 882.017 kb on + strand, within Echvi_0781at 882.022 kb on - strand, within Echvi_0781at 882.022 kb on - strand, within Echvi_0781at 882.069 kb on + strand, within Echvi_0781at 882.109 kb on + strand, within Echvi_0781at 882.110 kb on - strand, within Echvi_0781at 882.121 kb on - strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.218 kb on - strand, within Echvi_0781at 882.218 kb on - strand, within Echvi_0781at 882.218 kb on - strand, within Echvi_0781at 882.218 kb on - strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.232 kb on - strand, within Echvi_0781at 882.239 kb on - strand, within Echvi_0781at 882.283 kb on + strand, within Echvi_0781at 882.284 kb on - strand, within Echvi_0781at 882.284 kb on - strand, within Echvi_0781at 882.284 kb on - strand, within Echvi_0781at 882.337 kb on - strand, within Echvi_0781at 882.347 kb on + strand, within Echvi_0781at 882.348 kb on - strand, within Echvi_0781at 882.452 kb on - strand, within Echvi_0781at 882.476 kb on - strand, within Echvi_0781at 882.482 kb on + strand, within Echvi_0781at 882.483 kb on - strand, within Echvi_0781at 882.483 kb on - strand, within Echvi_0781at 882.485 kb on - strand, within Echvi_0781at 882.485 kb on - strand, within Echvi_0781at 882.485 kb on - strand, within Echvi_0781at 882.486 kb on + strand, within Echvi_0781at 882.487 kb on - strand, within Echvi_0781at 882.487 kb on - strand, within Echvi_0781at 882.487 kb on - strand, within Echvi_0781at 882.487 kb on - strand, within Echvi_0781at 882.489 kb on + strand, within Echvi_0781at 882.489 kb on + strand, within Echvi_0781at 882.490 kb on - strand, within Echvi_0781at 882.490 kb on - strand, within Echvi_0781at 882.492 kb on + strand, within Echvi_0781at 882.492 kb on + strand, within Echvi_0781at 882.493 kb on - strand, within Echvi_0781at 882.538 kb on - strandat 882.545 kb on + strandat 882.550 kb on - strandat 882.609 kb on + strandat 882.610 kb on - strandat 882.627 kb on + strandat 882.627 kb on + strandat 882.667 kb on - strandat 882.717 kb on - strand, within Echvi_0782at 882.776 kb on + strand, within Echvi_0782at 882.827 kb on + strand, within Echvi_0782at 882.827 kb on + strand, within Echvi_0782at 882.827 kb on + strand, within Echvi_0782at 882.827 kb on + strand, within Echvi_0782at 882.831 kb on + strand, within Echvi_0782at 882.831 kb on + strand, within Echvi_0782at 882.831 kb on + strand, within Echvi_0782at 882.831 kb on + strand, within Echvi_0782at 882.831 kb on + strandat 882.831 kb on + strand, within Echvi_0782at 882.831 kb on + strand, within Echvi_0782at 882.831 kb on + strand, within Echvi_0782at 882.832 kb on - strand, within Echvi_0782at 882.832 kb on - strand, within Echvi_0782at 882.832 kb on - strand, within Echvi_0782at 882.832 kb on - strand, within Echvi_0782at 882.839 kb on + strand, within Echvi_0782at 882.884 kb on - strand, within Echvi_0782at 882.884 kb on - strand, within Echvi_0782at 882.885 kb on + strand, within Echvi_0782at 882.886 kb on - strand, within Echvi_0782at 882.913 kb on - strand, within Echvi_0782at 882.942 kb on + strand, within Echvi_0782at 882.942 kb on + strand, within Echvi_0782at 882.942 kb on + strand, within Echvi_0782at 882.943 kb on - strand, within Echvi_0782at 882.976 kb on - strand, within Echvi_0782at 882.976 kb on - strand, within Echvi_0782at 882.987 kb on + strand, within Echvi_0782at 882.988 kb on - strand, within Echvi_0782at 882.988 kb on - strand, within Echvi_0782at 882.995 kb on - strand, within Echvi_0782at 883.009 kb on + strand, within Echvi_0782at 883.009 kb on + strand, within Echvi_0782at 883.009 kb on + strand, within Echvi_0782at 883.010 kb on - strand, within Echvi_0782at 883.056 kb on + strand, within Echvi_0782at 883.146 kb on - strand, within Echvi_0782at 883.147 kb on + strand, within Echvi_0782at 883.148 kb on - strand, within Echvi_0782at 883.153 kb on - strand, within Echvi_0782at 883.228 kb on + strand, within Echvi_0782at 883.233 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.238 kb on - strand, within Echvi_0782at 883.238 kb on - strand, within Echvi_0782at 883.238 kb on - strand, within Echvi_0782at 883.238 kb on - strand, within Echvi_0782at 883.238 kb on - strand, within Echvi_0782at 883.238 kb on - strand, within Echvi_0782at 883.239 kb on + strand, within Echvi_0782at 883.239 kb on + strand, within Echvi_0782at 883.239 kb on + strand, within Echvi_0782at 883.239 kb on + strand, within Echvi_0782at 883.239 kb on + strand, within Echvi_0782at 883.240 kb on - strand, within Echvi_0782at 883.240 kb on - strand, within Echvi_0782at 883.365 kb on + strand, within Echvi_0782at 883.366 kb on - strand, within Echvi_0782at 883.366 kb on - strand, within Echvi_0782at 883.520 kb on + strandat 883.521 kb on - strandat 883.521 kb on - strandat 883.524 kb on + strandat 883.524 kb on + strandat 883.524 kb on + strandat 883.525 kb on - strandat 883.528 kb on - strandat 883.528 kb on - strandat 883.530 kb on + strandat 883.530 kb on + strandat 883.530 kb on + strandat 883.530 kb on + strandat 883.534 kb on + strandat 883.542 kb on - strandat 883.542 kb on - strandat 883.542 kb on - strandat 883.545 kb on + strandat 883.545 kb on + strandat 883.545 kb on + strandat 883.545 kb on + strandat 883.545 kb on + strandat 883.546 kb on - strandat 883.546 kb on - strandat 883.546 kb on - strandat 883.549 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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881,809 + +0.7
881,811 + -0.8
881,811 + +0.7
881,817 + +0.0
881,817 + +0.3
881,817 + -0.4
881,818 - +0.3
881,846 + -1.7
881,846 + +0.1
881,869 + -0.5
881,869 + -1.0
881,869 + -0.1
881,870 - -0.0
881,870 - -0.3
881,874 - +1.1
881,920 + Echvi_0781 0.14 -1.7
881,923 + Echvi_0781 0.14 -0.4
881,923 + Echvi_0781 0.14 -0.8
881,925 + Echvi_0781 0.14 -3.4
881,974 - Echvi_0781 0.20 +2.2
882,006 + Echvi_0781 0.24 -1.5
882,007 - Echvi_0781 0.25 -0.2
882,017 + Echvi_0781 0.26 -0.8
882,017 + Echvi_0781 0.26 -1.0
882,022 - Echvi_0781 0.27 -0.1
882,022 - Echvi_0781 0.27 +0.6
882,069 + Echvi_0781 0.32 -1.1
882,109 + Echvi_0781 0.38 +0.2
882,110 - Echvi_0781 0.38 +0.9
882,121 - Echvi_0781 0.39 -1.5
882,217 + Echvi_0781 0.51 -1.3
882,217 + Echvi_0781 0.51 -0.7
882,217 + Echvi_0781 0.51 -0.9
882,217 + Echvi_0781 0.51 -0.9
882,217 + Echvi_0781 0.51 -1.3
882,217 + Echvi_0781 0.51 -1.3
882,217 + Echvi_0781 0.51 -3.2
882,218 - Echvi_0781 0.51 -0.7
882,218 - Echvi_0781 0.51 +1.2
882,218 - Echvi_0781 0.51 +1.1
882,218 - Echvi_0781 0.51 +3.1
882,219 + Echvi_0781 0.51 -0.9
882,219 + Echvi_0781 0.51 -1.4
882,219 + Echvi_0781 0.51 +0.1
882,219 + Echvi_0781 0.51 -0.9
882,219 + Echvi_0781 0.51 -0.8
882,219 + Echvi_0781 0.51 -2.4
882,232 - Echvi_0781 0.53 -0.1
882,239 - Echvi_0781 0.54 -1.7
882,283 + Echvi_0781 0.59 -1.6
882,284 - Echvi_0781 0.60 +0.9
882,284 - Echvi_0781 0.60 -0.6
882,284 - Echvi_0781 0.60 +0.3
882,337 - Echvi_0781 0.66 -0.2
882,347 + Echvi_0781 0.68 -1.8
882,348 - Echvi_0781 0.68 -0.7
882,452 - Echvi_0781 0.81 -0.7
882,476 - Echvi_0781 0.84 +0.5
882,482 + Echvi_0781 0.85 -2.8
882,483 - Echvi_0781 0.85 +0.9
882,483 - Echvi_0781 0.85 -0.3
882,485 - Echvi_0781 0.85 -0.3
882,485 - Echvi_0781 0.85 -0.1
882,485 - Echvi_0781 0.85 +0.8
882,486 + Echvi_0781 0.85 -2.1
882,487 - Echvi_0781 0.85 +1.2
882,487 - Echvi_0781 0.85 +0.9
882,487 - Echvi_0781 0.85 -1.0
882,487 - Echvi_0781 0.85 +0.2
882,489 + Echvi_0781 0.85 -2.5
882,489 + Echvi_0781 0.85 -1.0
882,490 - Echvi_0781 0.86 +0.1
882,490 - Echvi_0781 0.86 -0.8
882,492 + Echvi_0781 0.86 -1.0
882,492 + Echvi_0781 0.86 -2.1
882,493 - Echvi_0781 0.86 -1.3
882,538 - -0.3
882,545 + +1.2
882,550 - -0.3
882,609 + -0.3
882,610 - -0.3
882,627 + +0.1
882,627 + -1.4
882,667 - -0.6
882,717 - Echvi_0782 0.12 -0.7
882,776 + Echvi_0782 0.18 -0.1
882,827 + Echvi_0782 0.24 -3.0
882,827 + Echvi_0782 0.24 +1.1
882,827 + Echvi_0782 0.24 -0.1
882,827 + Echvi_0782 0.24 +0.3
882,831 + Echvi_0782 0.24 -0.1
882,831 + Echvi_0782 0.24 -0.3
882,831 + Echvi_0782 0.24 -2.3
882,831 + Echvi_0782 0.24 -0.8
882,831 + +0.3
882,831 + Echvi_0782 0.24 -1.3
882,831 + Echvi_0782 0.24 +2.7
882,831 + Echvi_0782 0.24 -1.3
882,832 - Echvi_0782 0.25 +0.9
882,832 - Echvi_0782 0.25 -0.5
882,832 - Echvi_0782 0.25 +0.3
882,832 - Echvi_0782 0.25 +0.3
882,839 + Echvi_0782 0.25 +0.8
882,884 - Echvi_0782 0.30 -1.9
882,884 - Echvi_0782 0.30 -1.5
882,885 + Echvi_0782 0.30 -2.1
882,886 - Echvi_0782 0.30 -1.1
882,913 - Echvi_0782 0.33 -1.1
882,942 + Echvi_0782 0.36 +0.2
882,942 + Echvi_0782 0.36 +0.3
882,942 + Echvi_0782 0.36 +0.8
882,943 - Echvi_0782 0.37 -0.7
882,976 - Echvi_0782 0.40 +0.8
882,976 - Echvi_0782 0.40 +1.0
882,987 + Echvi_0782 0.41 -0.1
882,988 - Echvi_0782 0.41 -0.1
882,988 - Echvi_0782 0.41 +0.4
882,995 - Echvi_0782 0.42 -0.7
883,009 + Echvi_0782 0.44 -0.2
883,009 + Echvi_0782 0.44 -0.1
883,009 + Echvi_0782 0.44 -0.3
883,010 - Echvi_0782 0.44 -0.7
883,056 + Echvi_0782 0.49 -1.7
883,146 - Echvi_0782 0.59 +0.5
883,147 + Echvi_0782 0.59 +1.4
883,148 - Echvi_0782 0.59 +0.7
883,153 - Echvi_0782 0.59 +1.5
883,228 + Echvi_0782 0.68 -1.3
883,233 + Echvi_0782 0.68 +0.2
883,237 + Echvi_0782 0.69 -0.1
883,237 + Echvi_0782 0.69 +0.1
883,237 + Echvi_0782 0.69 +0.1
883,237 + Echvi_0782 0.69 +1.3
883,237 + Echvi_0782 0.69 +1.1
883,237 + Echvi_0782 0.69 -0.7
883,237 + Echvi_0782 0.69 -0.3
883,238 - Echvi_0782 0.69 +0.5
883,238 - Echvi_0782 0.69 +3.2
883,238 - Echvi_0782 0.69 -1.9
883,238 - Echvi_0782 0.69 +0.5
883,238 - Echvi_0782 0.69 +0.2
883,238 - Echvi_0782 0.69 +0.8
883,239 + Echvi_0782 0.69 +0.4
883,239 + Echvi_0782 0.69 +1.5
883,239 + Echvi_0782 0.69 +0.2
883,239 + Echvi_0782 0.69 -0.4
883,239 + Echvi_0782 0.69 -0.3
883,240 - Echvi_0782 0.69 -0.5
883,240 - Echvi_0782 0.69 +0.7
883,365 + Echvi_0782 0.82 -0.1
883,366 - Echvi_0782 0.83 +1.3
883,366 - Echvi_0782 0.83 +0.1
883,520 + -0.7
883,521 - +0.1
883,521 - -2.3
883,524 + +0.3
883,524 + +1.4
883,524 + +1.7
883,525 - +0.2
883,528 - -1.2
883,528 - -0.7
883,530 + +0.4
883,530 + +0.6
883,530 + +0.4
883,530 + -1.1
883,534 + -0.1
883,542 - -2.0
883,542 - +1.0
883,542 - -0.9
883,545 + +0.3
883,545 + +0.0
883,545 + +2.9
883,545 + -0.7
883,545 + -0.1
883,546 - -0.0
883,546 - -0.9
883,546 - +0.2
883,549 - -1.6

Or see this region's nucleotide sequence