Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0765

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0764 and Echvi_0765 are separated by 225 nucleotidesEchvi_0765 and Echvi_0766 are separated by 84 nucleotides Echvi_0764: Echvi_0764 - Small-conductance mechanosensitive channel, at 856,526 to 857,575 _0764 Echvi_0765: Echvi_0765 - Carbon starvation protein, predicted membrane protein, at 857,801 to 859,435 _0765 Echvi_0766: Echvi_0766 - hypothetical protein, at 859,520 to 860,314 _0766 Position (kb) 857 858 859 860Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 856.814 kb on + strand, within Echvi_0764at 856.814 kb on + strand, within Echvi_0764at 856.820 kb on + strand, within Echvi_0764at 856.820 kb on + strand, within Echvi_0764at 856.821 kb on - strand, within Echvi_0764at 856.932 kb on + strand, within Echvi_0764at 856.932 kb on + strand, within Echvi_0764at 856.933 kb on - strand, within Echvi_0764at 856.933 kb on - strand, within Echvi_0764at 856.942 kb on + strand, within Echvi_0764at 856.993 kb on + strand, within Echvi_0764at 857.009 kb on - strand, within Echvi_0764at 857.074 kb on + strand, within Echvi_0764at 857.141 kb on - strand, within Echvi_0764at 857.180 kb on + strand, within Echvi_0764at 857.317 kb on + strand, within Echvi_0764at 857.352 kb on + strand, within Echvi_0764at 857.374 kb on + strand, within Echvi_0764at 857.374 kb on + strand, within Echvi_0764at 857.475 kb on + strandat 857.475 kb on + strandat 857.516 kb on + strandat 857.517 kb on - strandat 857.517 kb on - strandat 857.517 kb on - strandat 857.562 kb on - strandat 857.608 kb on + strandat 857.613 kb on + strandat 857.645 kb on - strandat 857.716 kb on - strandat 857.723 kb on - strandat 857.763 kb on + strandat 857.764 kb on - strandat 857.766 kb on + strandat 857.769 kb on - strandat 857.821 kb on - strandat 857.937 kb on + strandat 857.971 kb on - strand, within Echvi_0765at 858.094 kb on - strand, within Echvi_0765at 858.109 kb on + strand, within Echvi_0765at 858.109 kb on + strand, within Echvi_0765at 858.109 kb on + strand, within Echvi_0765at 858.136 kb on + strand, within Echvi_0765at 858.198 kb on + strand, within Echvi_0765at 858.198 kb on + strandat 858.199 kb on - strand, within Echvi_0765at 858.228 kb on + strand, within Echvi_0765at 858.228 kb on + strand, within Echvi_0765at 858.229 kb on - strand, within Echvi_0765at 858.334 kb on + strand, within Echvi_0765at 858.334 kb on + strand, within Echvi_0765at 858.342 kb on + strand, within Echvi_0765at 858.343 kb on - strand, within Echvi_0765at 858.398 kb on + strand, within Echvi_0765at 858.398 kb on + strand, within Echvi_0765at 858.398 kb on + strand, within Echvi_0765at 858.399 kb on - strand, within Echvi_0765at 858.402 kb on - strand, within Echvi_0765at 858.402 kb on - strand, within Echvi_0765at 858.402 kb on - strand, within Echvi_0765at 858.410 kb on + strand, within Echvi_0765at 858.411 kb on - strand, within Echvi_0765at 858.445 kb on + strand, within Echvi_0765at 858.445 kb on + strand, within Echvi_0765at 858.445 kb on + strand, within Echvi_0765at 858.446 kb on - strand, within Echvi_0765at 858.446 kb on - strand, within Echvi_0765at 858.458 kb on + strand, within Echvi_0765at 858.458 kb on + strand, within Echvi_0765at 858.474 kb on - strand, within Echvi_0765at 858.501 kb on + strand, within Echvi_0765at 858.502 kb on - strand, within Echvi_0765at 858.513 kb on + strand, within Echvi_0765at 858.514 kb on - strand, within Echvi_0765at 858.514 kb on - strand, within Echvi_0765at 858.514 kb on - strand, within Echvi_0765at 858.527 kb on + strand, within Echvi_0765at 858.532 kb on + strand, within Echvi_0765at 858.533 kb on - strand, within Echvi_0765at 858.533 kb on - strand, within Echvi_0765at 858.535 kb on + strand, within Echvi_0765at 858.536 kb on - strand, within Echvi_0765at 858.536 kb on - strand, within Echvi_0765at 858.548 kb on + strand, within Echvi_0765at 858.557 kb on - strand, within Echvi_0765at 858.584 kb on + strand, within Echvi_0765at 858.635 kb on - strand, within Echvi_0765at 858.648 kb on + strand, within Echvi_0765at 858.661 kb on - strand, within Echvi_0765at 858.661 kb on - strand, within Echvi_0765at 858.842 kb on + strand, within Echvi_0765at 858.842 kb on + strand, within Echvi_0765at 858.844 kb on + strand, within Echvi_0765at 858.845 kb on - strand, within Echvi_0765at 858.845 kb on - strand, within Echvi_0765at 858.845 kb on - strand, within Echvi_0765at 858.995 kb on - strand, within Echvi_0765at 859.077 kb on - strand, within Echvi_0765at 859.110 kb on + strand, within Echvi_0765at 859.144 kb on - strand, within Echvi_0765at 859.153 kb on - strand, within Echvi_0765at 859.174 kb on - strand, within Echvi_0765at 859.227 kb on + strand, within Echvi_0765at 859.248 kb on + strand, within Echvi_0765at 859.325 kb on + strandat 859.326 kb on - strandat 859.328 kb on - strandat 859.371 kb on + strandat 859.483 kb on - strandat 859.686 kb on + strand, within Echvi_0766at 859.687 kb on - strand, within Echvi_0766at 859.703 kb on + strand, within Echvi_0766at 859.705 kb on + strand, within Echvi_0766at 859.908 kb on - strand, within Echvi_0766at 859.908 kb on - strand, within Echvi_0766at 859.909 kb on + strand, within Echvi_0766at 859.909 kb on + strand, within Echvi_0766at 859.910 kb on - strand, within Echvi_0766at 859.910 kb on - strand, within Echvi_0766at 859.932 kb on + strand, within Echvi_0766at 859.932 kb on + strand, within Echvi_0766at 859.932 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.935 kb on - strand, within Echvi_0766at 859.941 kb on + strand, within Echvi_0766at 859.942 kb on - strand, within Echvi_0766at 859.956 kb on - strand, within Echvi_0766at 859.969 kb on + strand, within Echvi_0766at 860.207 kb on - strand, within Echvi_0766at 860.210 kb on + strand, within Echvi_0766at 860.211 kb on - strand, within Echvi_0766at 860.247 kb on + strandat 860.258 kb on - strandat 860.343 kb on + strandat 860.344 kb on - strandat 860.348 kb on + strandat 860.349 kb on - strandat 860.410 kb on - strandat 860.412 kb on + strandat 860.413 kb on - strandat 860.413 kb on - strandat 860.421 kb on - strandat 860.426 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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856,814 + Echvi_0764 0.27 -0.6
856,814 + Echvi_0764 0.27 -1.2
856,820 + Echvi_0764 0.28 +0.5
856,820 + Echvi_0764 0.28 -0.6
856,821 - Echvi_0764 0.28 +1.4
856,932 + Echvi_0764 0.39 +0.5
856,932 + Echvi_0764 0.39 -0.1
856,933 - Echvi_0764 0.39 +0.4
856,933 - Echvi_0764 0.39 -1.7
856,942 + Echvi_0764 0.40 -1.0
856,993 + Echvi_0764 0.44 +0.6
857,009 - Echvi_0764 0.46 -0.3
857,074 + Echvi_0764 0.52 +0.4
857,141 - Echvi_0764 0.59 -0.8
857,180 + Echvi_0764 0.62 -0.2
857,317 + Echvi_0764 0.75 +0.4
857,352 + Echvi_0764 0.79 +0.0
857,374 + Echvi_0764 0.81 -0.4
857,374 + Echvi_0764 0.81 -1.0
857,475 + -1.2
857,475 + +0.3
857,516 + -0.9
857,517 - +0.1
857,517 - -0.2
857,517 - +1.7
857,562 - -0.7
857,608 + -0.6
857,613 + -3.1
857,645 - +0.9
857,716 - +0.3
857,723 - -0.3
857,763 + -0.5
857,764 - -0.1
857,766 + -1.5
857,769 - +0.6
857,821 - +0.0
857,937 + -0.5
857,971 - Echvi_0765 0.10 -2.2
858,094 - Echvi_0765 0.18 +0.4
858,109 + Echvi_0765 0.19 -1.8
858,109 + Echvi_0765 0.19 +0.5
858,109 + Echvi_0765 0.19 -1.0
858,136 + Echvi_0765 0.20 +0.6
858,198 + Echvi_0765 0.24 -0.4
858,198 + +1.7
858,199 - Echvi_0765 0.24 -0.6
858,228 + Echvi_0765 0.26 -0.6
858,228 + Echvi_0765 0.26 +1.3
858,229 - Echvi_0765 0.26 -0.2
858,334 + Echvi_0765 0.33 +0.6
858,334 + Echvi_0765 0.33 -0.0
858,342 + Echvi_0765 0.33 -1.2
858,343 - Echvi_0765 0.33 +0.4
858,398 + Echvi_0765 0.37 +0.4
858,398 + Echvi_0765 0.37 +1.7
858,398 + Echvi_0765 0.37 -1.8
858,399 - Echvi_0765 0.37 -0.4
858,402 - Echvi_0765 0.37 +0.1
858,402 - Echvi_0765 0.37 +0.3
858,402 - Echvi_0765 0.37 +0.5
858,410 + Echvi_0765 0.37 -1.4
858,411 - Echvi_0765 0.37 -2.1
858,445 + Echvi_0765 0.39 -0.9
858,445 + Echvi_0765 0.39 -0.6
858,445 + Echvi_0765 0.39 -1.8
858,446 - Echvi_0765 0.39 +1.3
858,446 - Echvi_0765 0.39 +0.2
858,458 + Echvi_0765 0.40 +1.7
858,458 + Echvi_0765 0.40 +0.1
858,474 - Echvi_0765 0.41 -1.2
858,501 + Echvi_0765 0.43 -0.3
858,502 - Echvi_0765 0.43 +0.2
858,513 + Echvi_0765 0.44 -1.8
858,514 - Echvi_0765 0.44 -0.6
858,514 - Echvi_0765 0.44 -1.3
858,514 - Echvi_0765 0.44 -0.7
858,527 + Echvi_0765 0.44 +0.3
858,532 + Echvi_0765 0.45 -1.7
858,533 - Echvi_0765 0.45 -0.6
858,533 - Echvi_0765 0.45 +0.3
858,535 + Echvi_0765 0.45 -1.7
858,536 - Echvi_0765 0.45 -0.4
858,536 - Echvi_0765 0.45 -2.0
858,548 + Echvi_0765 0.46 +4.3
858,557 - Echvi_0765 0.46 +0.1
858,584 + Echvi_0765 0.48 -0.7
858,635 - Echvi_0765 0.51 -0.1
858,648 + Echvi_0765 0.52 -0.2
858,661 - Echvi_0765 0.53 -0.5
858,661 - Echvi_0765 0.53 -2.0
858,842 + Echvi_0765 0.64 +0.1
858,842 + Echvi_0765 0.64 -1.6
858,844 + Echvi_0765 0.64 -0.2
858,845 - Echvi_0765 0.64 -0.3
858,845 - Echvi_0765 0.64 -3.2
858,845 - Echvi_0765 0.64 +1.2
858,995 - Echvi_0765 0.73 -1.5
859,077 - Echvi_0765 0.78 -0.1
859,110 + Echvi_0765 0.80 -0.2
859,144 - Echvi_0765 0.82 -0.6
859,153 - Echvi_0765 0.83 +1.8
859,174 - Echvi_0765 0.84 -0.4
859,227 + Echvi_0765 0.87 -0.9
859,248 + Echvi_0765 0.89 -0.9
859,325 + -0.8
859,326 - +1.3
859,328 - -0.8
859,371 + -0.0
859,483 - +0.7
859,686 + Echvi_0766 0.21 +0.3
859,687 - Echvi_0766 0.21 +0.9
859,703 + Echvi_0766 0.23 -0.6
859,705 + Echvi_0766 0.23 -0.9
859,908 - Echvi_0766 0.49 -1.0
859,908 - Echvi_0766 0.49 -0.6
859,909 + Echvi_0766 0.49 -0.2
859,909 + Echvi_0766 0.49 -2.2
859,910 - Echvi_0766 0.49 +0.5
859,910 - Echvi_0766 0.49 -0.6
859,932 + Echvi_0766 0.52 +0.1
859,932 + Echvi_0766 0.52 -0.2
859,932 + Echvi_0766 0.52 -1.3
859,934 + Echvi_0766 0.52 +0.8
859,934 + Echvi_0766 0.52 -1.0
859,934 + Echvi_0766 0.52 -1.7
859,934 + Echvi_0766 0.52 -0.3
859,934 + Echvi_0766 0.52 +1.2
859,935 - Echvi_0766 0.52 +0.3
859,941 + Echvi_0766 0.53 -2.2
859,942 - Echvi_0766 0.53 +0.3
859,956 - Echvi_0766 0.55 -0.2
859,969 + Echvi_0766 0.56 -0.7
860,207 - Echvi_0766 0.86 +0.7
860,210 + Echvi_0766 0.87 -0.7
860,211 - Echvi_0766 0.87 +0.3
860,247 + -0.8
860,258 - +0.3
860,343 + +0.0
860,344 - +1.5
860,348 + +0.7
860,349 - -0.9
860,410 - +0.0
860,412 + -0.6
860,413 - -1.5
860,413 - +0.5
860,421 - +0.1
860,426 + +0.0

Or see this region's nucleotide sequence