Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0743

Experiment: m.b. Nalidixic 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0741 and Echvi_0742 are separated by 5 nucleotidesEchvi_0742 and Echvi_0743 are separated by 57 nucleotidesEchvi_0743 and Echvi_0744 are separated by 226 nucleotides Echvi_0741: Echvi_0741 - Putative NADPH-quinone reductase (modulator of drug activity B), at 830,434 to 831,012 _0741 Echvi_0742: Echvi_0742 - hypothetical protein, at 831,018 to 831,356 _0742 Echvi_0743: Echvi_0743 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 831,414 to 831,995 _0743 Echvi_0744: Echvi_0744 - glycine dehydrogenase (decarboxylating), at 832,222 to 835,122 _0744 Position (kb) 831 832Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 830.424 kb on - strandat 830.435 kb on + strandat 830.436 kb on - strandat 830.436 kb on - strandat 830.466 kb on + strandat 830.467 kb on - strandat 830.545 kb on + strand, within Echvi_0741at 830.545 kb on + strand, within Echvi_0741at 830.577 kb on + strand, within Echvi_0741at 830.577 kb on + strand, within Echvi_0741at 830.610 kb on - strand, within Echvi_0741at 830.662 kb on + strand, within Echvi_0741at 830.677 kb on + strand, within Echvi_0741at 830.698 kb on - strand, within Echvi_0741at 830.745 kb on + strand, within Echvi_0741at 830.745 kb on + strand, within Echvi_0741at 830.746 kb on - strand, within Echvi_0741at 830.746 kb on - strand, within Echvi_0741at 830.824 kb on + strand, within Echvi_0741at 830.825 kb on - strand, within Echvi_0741at 830.862 kb on - strand, within Echvi_0741at 830.862 kb on - strand, within Echvi_0741at 830.866 kb on + strand, within Echvi_0741at 830.866 kb on + strand, within Echvi_0741at 830.867 kb on - strand, within Echvi_0741at 830.867 kb on - strand, within Echvi_0741at 830.867 kb on - strand, within Echvi_0741at 830.942 kb on + strand, within Echvi_0741at 830.942 kb on + strand, within Echvi_0741at 830.942 kb on + strand, within Echvi_0741at 830.942 kb on + strand, within Echvi_0741at 830.966 kb on + strandat 830.967 kb on - strandat 830.967 kb on - strandat 831.001 kb on + strandat 831.004 kb on - strandat 831.053 kb on + strand, within Echvi_0742at 831.054 kb on - strand, within Echvi_0742at 831.085 kb on + strand, within Echvi_0742at 831.086 kb on - strand, within Echvi_0742at 831.132 kb on - strand, within Echvi_0742at 831.148 kb on - strand, within Echvi_0742at 831.148 kb on - strand, within Echvi_0742at 831.183 kb on + strand, within Echvi_0742at 831.183 kb on + strand, within Echvi_0742at 831.183 kb on + strand, within Echvi_0742at 831.183 kb on + strand, within Echvi_0742at 831.184 kb on - strand, within Echvi_0742at 831.184 kb on - strand, within Echvi_0742at 831.185 kb on + strand, within Echvi_0742at 831.214 kb on - strand, within Echvi_0742at 831.220 kb on + strand, within Echvi_0742at 831.221 kb on - strand, within Echvi_0742at 831.226 kb on + strand, within Echvi_0742at 831.227 kb on - strand, within Echvi_0742at 831.228 kb on + strand, within Echvi_0742at 831.229 kb on - strand, within Echvi_0742at 831.229 kb on - strand, within Echvi_0742at 831.248 kb on - strand, within Echvi_0742at 831.248 kb on - strand, within Echvi_0742at 831.268 kb on + strand, within Echvi_0742at 831.273 kb on + strand, within Echvi_0742at 831.339 kb on + strandat 831.340 kb on - strandat 831.408 kb on + strandat 831.409 kb on - strandat 831.410 kb on + strandat 831.410 kb on + strandat 831.411 kb on - strandat 831.411 kb on - strandat 831.472 kb on + strandat 831.473 kb on - strand, within Echvi_0743at 831.519 kb on + strand, within Echvi_0743at 831.520 kb on - strand, within Echvi_0743at 831.535 kb on + strand, within Echvi_0743at 831.536 kb on - strand, within Echvi_0743at 831.569 kb on + strand, within Echvi_0743at 831.640 kb on + strand, within Echvi_0743at 831.665 kb on + strand, within Echvi_0743at 831.666 kb on - strand, within Echvi_0743at 831.712 kb on + strand, within Echvi_0743at 831.712 kb on + strand, within Echvi_0743at 831.713 kb on - strand, within Echvi_0743at 831.713 kb on - strand, within Echvi_0743at 831.744 kb on + strand, within Echvi_0743at 831.745 kb on - strand, within Echvi_0743at 831.811 kb on + strand, within Echvi_0743at 831.812 kb on - strand, within Echvi_0743at 831.812 kb on - strand, within Echvi_0743at 831.814 kb on + strand, within Echvi_0743at 831.834 kb on + strand, within Echvi_0743at 831.879 kb on + strand, within Echvi_0743at 831.880 kb on - strand, within Echvi_0743at 831.912 kb on - strand, within Echvi_0743at 831.955 kb on + strandat 831.956 kb on - strandat 831.956 kb on - strandat 832.004 kb on + strandat 832.043 kb on - strandat 832.058 kb on + strandat 832.058 kb on + strandat 832.058 kb on + strandat 832.058 kb on + strandat 832.058 kb on + strandat 832.058 kb on + strandat 832.059 kb on - strandat 832.059 kb on - strandat 832.059 kb on - strandat 832.060 kb on + strandat 832.061 kb on - strandat 832.061 kb on - strandat 832.092 kb on - strandat 832.168 kb on + strandat 832.220 kb on + strandat 832.221 kb on - strandat 832.223 kb on + strandat 832.223 kb on + strandat 832.223 kb on + strandat 832.224 kb on - strandat 832.247 kb on + strandat 832.293 kb on - strandat 832.343 kb on + strandat 832.709 kb on + strand, within Echvi_0744at 832.758 kb on + strand, within Echvi_0744at 832.758 kb on + strand, within Echvi_0744

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
remove
830,424 - -0.9
830,435 + -0.3
830,436 - -1.5
830,436 - +0.9
830,466 + -0.7
830,467 - +0.3
830,545 + Echvi_0741 0.19 -0.8
830,545 + Echvi_0741 0.19 -0.1
830,577 + Echvi_0741 0.25 -0.3
830,577 + Echvi_0741 0.25 -0.4
830,610 - Echvi_0741 0.30 +1.3
830,662 + Echvi_0741 0.39 -1.1
830,677 + Echvi_0741 0.42 -0.4
830,698 - Echvi_0741 0.46 +0.5
830,745 + Echvi_0741 0.54 +0.0
830,745 + Echvi_0741 0.54 -3.3
830,746 - Echvi_0741 0.54 +0.0
830,746 - Echvi_0741 0.54 +1.7
830,824 + Echvi_0741 0.67 +0.6
830,825 - Echvi_0741 0.68 -0.3
830,862 - Echvi_0741 0.74 -2.4
830,862 - Echvi_0741 0.74 -0.2
830,866 + Echvi_0741 0.75 +1.7
830,866 + Echvi_0741 0.75 -0.7
830,867 - Echvi_0741 0.75 +0.4
830,867 - Echvi_0741 0.75 +0.5
830,867 - Echvi_0741 0.75 +0.9
830,942 + Echvi_0741 0.88 -0.1
830,942 + Echvi_0741 0.88 -0.8
830,942 + Echvi_0741 0.88 -1.5
830,942 + Echvi_0741 0.88 +0.9
830,966 + -1.1
830,967 - -1.3
830,967 - -1.8
831,001 + -0.3
831,004 - +0.5
831,053 + Echvi_0742 0.10 -0.4
831,054 - Echvi_0742 0.11 +0.3
831,085 + Echvi_0742 0.20 -0.8
831,086 - Echvi_0742 0.20 -0.5
831,132 - Echvi_0742 0.34 -1.0
831,148 - Echvi_0742 0.38 -0.6
831,148 - Echvi_0742 0.38 -0.0
831,183 + Echvi_0742 0.49 +1.3
831,183 + Echvi_0742 0.49 +0.7
831,183 + Echvi_0742 0.49 -0.1
831,183 + Echvi_0742 0.49 -0.3
831,184 - Echvi_0742 0.49 -0.7
831,184 - Echvi_0742 0.49 -0.4
831,185 + Echvi_0742 0.49 -0.1
831,214 - Echvi_0742 0.58 +0.3
831,220 + Echvi_0742 0.60 +0.0
831,221 - Echvi_0742 0.60 +0.3
831,226 + Echvi_0742 0.61 -0.1
831,227 - Echvi_0742 0.62 +1.3
831,228 + Echvi_0742 0.62 +0.1
831,229 - Echvi_0742 0.62 +1.3
831,229 - Echvi_0742 0.62 -0.3
831,248 - Echvi_0742 0.68 +0.8
831,248 - Echvi_0742 0.68 -1.3
831,268 + Echvi_0742 0.74 -0.9
831,273 + Echvi_0742 0.75 +0.8
831,339 + -1.0
831,340 - +0.3
831,408 + +0.2
831,409 - -0.1
831,410 + -0.8
831,410 + +0.9
831,411 - -1.0
831,411 - +0.9
831,472 + -0.6
831,473 - Echvi_0743 0.10 -2.5
831,519 + Echvi_0743 0.18 -0.6
831,520 - Echvi_0743 0.18 -0.7
831,535 + Echvi_0743 0.21 -0.3
831,536 - Echvi_0743 0.21 -1.4
831,569 + Echvi_0743 0.27 -0.7
831,640 + Echvi_0743 0.39 -0.8
831,665 + Echvi_0743 0.43 -1.3
831,666 - Echvi_0743 0.43 -1.1
831,712 + Echvi_0743 0.51 -0.6
831,712 + Echvi_0743 0.51 -0.7
831,713 - Echvi_0743 0.51 -0.1
831,713 - Echvi_0743 0.51 -1.7
831,744 + Echvi_0743 0.57 -0.0
831,745 - Echvi_0743 0.57 -0.3
831,811 + Echvi_0743 0.68 -0.5
831,812 - Echvi_0743 0.68 +0.2
831,812 - Echvi_0743 0.68 +0.3
831,814 + Echvi_0743 0.69 -0.9
831,834 + Echvi_0743 0.72 +0.2
831,879 + Echvi_0743 0.80 -0.1
831,880 - Echvi_0743 0.80 -0.3
831,912 - Echvi_0743 0.86 -1.5
831,955 + -1.7
831,956 - -1.5
831,956 - +0.4
832,004 + -0.5
832,043 - +0.1
832,058 + -0.3
832,058 + -0.1
832,058 + +0.6
832,058 + -0.3
832,058 + -1.4
832,058 + +1.4
832,059 - +0.3
832,059 - -0.3
832,059 - +0.2
832,060 + +0.6
832,061 - -0.9
832,061 - +0.0
832,092 - -0.9
832,168 + -1.0
832,220 + -0.1
832,221 - +0.3
832,223 + +2.2
832,223 + +0.2
832,223 + +0.4
832,224 - +0.7
832,247 + +3.1
832,293 - -0.1
832,343 + -1.5
832,709 + Echvi_0744 0.17 +0.1
832,758 + Echvi_0744 0.18 -1.1
832,758 + Echvi_0744 0.18 -1.1

Or see this region's nucleotide sequence