Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0680

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0679 and Echvi_0680 are separated by 355 nucleotidesEchvi_0680 and Echvi_0681 are separated by 1 nucleotides Echvi_0679: Echvi_0679 - hypothetical protein, at 763,257 to 764,255 _0679 Echvi_0680: Echvi_0680 - RND family efflux transporter, MFP subunit, at 764,611 to 765,693 _0680 Echvi_0681: Echvi_0681 - Cation/multidrug efflux pump, at 765,695 to 768,757 _0681 Position (kb) 764 765 766Strain fitness (log2 ratio) -2 -1 0 1 2 3at 763.659 kb on + strand, within Echvi_0679at 763.660 kb on - strand, within Echvi_0679at 763.660 kb on - strand, within Echvi_0679at 763.662 kb on + strand, within Echvi_0679at 763.662 kb on + strand, within Echvi_0679at 763.663 kb on - strand, within Echvi_0679at 763.663 kb on - strand, within Echvi_0679at 763.663 kb on - strand, within Echvi_0679at 763.678 kb on + strand, within Echvi_0679at 763.679 kb on - strand, within Echvi_0679at 763.694 kb on - strand, within Echvi_0679at 763.694 kb on - strand, within Echvi_0679at 763.718 kb on + strand, within Echvi_0679at 763.738 kb on - strand, within Echvi_0679at 763.739 kb on + strand, within Echvi_0679at 763.861 kb on + strand, within Echvi_0679at 763.861 kb on + strand, within Echvi_0679at 763.861 kb on + strand, within Echvi_0679at 763.861 kb on + strand, within Echvi_0679at 763.861 kb on + strand, within Echvi_0679at 763.861 kb on + strand, within Echvi_0679at 763.861 kb on + strand, within Echvi_0679at 763.862 kb on - strand, within Echvi_0679at 763.862 kb on - strand, within Echvi_0679at 763.862 kb on - strand, within Echvi_0679at 763.862 kb on - strand, within Echvi_0679at 763.926 kb on + strand, within Echvi_0679at 763.926 kb on + strand, within Echvi_0679at 763.926 kb on + strand, within Echvi_0679at 763.926 kb on + strand, within Echvi_0679at 763.927 kb on - strand, within Echvi_0679at 763.950 kb on + strand, within Echvi_0679at 763.950 kb on + strand, within Echvi_0679at 763.950 kb on + strand, within Echvi_0679at 763.951 kb on - strand, within Echvi_0679at 763.994 kb on + strand, within Echvi_0679at 764.046 kb on + strand, within Echvi_0679at 764.047 kb on - strand, within Echvi_0679at 764.103 kb on + strand, within Echvi_0679at 764.103 kb on + strand, within Echvi_0679at 764.231 kb on + strandat 764.231 kb on + strandat 764.305 kb on + strandat 764.329 kb on - strandat 764.352 kb on - strandat 764.388 kb on - strandat 764.392 kb on + strandat 764.416 kb on + strandat 764.568 kb on - strandat 764.590 kb on + strandat 764.591 kb on - strandat 764.630 kb on + strandat 764.640 kb on - strandat 764.676 kb on - strandat 764.687 kb on + strandat 764.688 kb on - strandat 764.931 kb on + strand, within Echvi_0680at 764.986 kb on + strand, within Echvi_0680at 764.987 kb on - strand, within Echvi_0680at 765.049 kb on + strand, within Echvi_0680at 765.049 kb on + strand, within Echvi_0680at 765.050 kb on - strand, within Echvi_0680at 765.050 kb on - strand, within Echvi_0680at 765.070 kb on + strand, within Echvi_0680at 765.071 kb on - strand, within Echvi_0680at 765.071 kb on - strand, within Echvi_0680at 765.071 kb on - strand, within Echvi_0680at 765.075 kb on + strand, within Echvi_0680at 765.076 kb on - strand, within Echvi_0680at 765.150 kb on - strand, within Echvi_0680at 765.150 kb on - strand, within Echvi_0680at 765.210 kb on + strand, within Echvi_0680at 765.210 kb on + strand, within Echvi_0680at 765.211 kb on - strand, within Echvi_0680at 765.211 kb on - strand, within Echvi_0680at 765.338 kb on - strand, within Echvi_0680at 765.459 kb on - strand, within Echvi_0680at 765.459 kb on - strand, within Echvi_0680at 765.644 kb on + strandat 765.644 kb on + strandat 765.644 kb on + strandat 765.705 kb on + strandat 765.706 kb on - strandat 765.714 kb on + strandat 765.714 kb on + strandat 765.714 kb on + strandat 765.715 kb on - strandat 765.715 kb on - strandat 765.721 kb on + strandat 765.722 kb on - strandat 765.848 kb on + strandat 765.848 kb on + strandat 765.849 kb on - strandat 765.849 kb on - strandat 765.849 kb on - strandat 765.849 kb on - strandat 765.849 kb on - strandat 765.852 kb on + strandat 765.852 kb on + strandat 765.853 kb on - strandat 765.917 kb on - strandat 765.968 kb on - strandat 765.997 kb on + strandat 765.997 kb on + strandat 766.109 kb on - strand, within Echvi_0681at 766.114 kb on - strand, within Echvi_0681at 766.171 kb on + strand, within Echvi_0681at 766.172 kb on - strand, within Echvi_0681at 766.306 kb on - strand, within Echvi_0681at 766.312 kb on + strand, within Echvi_0681at 766.375 kb on - strand, within Echvi_0681at 766.448 kb on - strand, within Echvi_0681at 766.573 kb on + strand, within Echvi_0681at 766.574 kb on - strand, within Echvi_0681at 766.574 kb on - strand, within Echvi_0681at 766.579 kb on + strand, within Echvi_0681at 766.579 kb on + strand, within Echvi_0681at 766.584 kb on + strand, within Echvi_0681at 766.584 kb on + strand, within Echvi_0681at 766.605 kb on + strand, within Echvi_0681at 766.638 kb on + strand, within Echvi_0681at 766.639 kb on - strand, within Echvi_0681at 766.639 kb on - strand, within Echvi_0681at 766.639 kb on - strand, within Echvi_0681at 766.664 kb on - strand, within Echvi_0681at 766.670 kb on + strand, within Echvi_0681at 766.670 kb on + strand, within Echvi_0681at 766.671 kb on - strand, within Echvi_0681at 766.673 kb on - strand, within Echvi_0681

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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763,659 + Echvi_0679 0.40 -1.3
763,660 - Echvi_0679 0.40 +0.6
763,660 - Echvi_0679 0.40 -1.8
763,662 + Echvi_0679 0.41 -0.1
763,662 + Echvi_0679 0.41 -1.6
763,663 - Echvi_0679 0.41 -1.5
763,663 - Echvi_0679 0.41 -0.1
763,663 - Echvi_0679 0.41 -0.1
763,678 + Echvi_0679 0.42 +0.4
763,679 - Echvi_0679 0.42 +1.0
763,694 - Echvi_0679 0.44 -1.3
763,694 - Echvi_0679 0.44 -0.6
763,718 + Echvi_0679 0.46 -0.5
763,738 - Echvi_0679 0.48 -0.5
763,739 + Echvi_0679 0.48 +2.0
763,861 + Echvi_0679 0.60 +0.1
763,861 + Echvi_0679 0.60 +0.4
763,861 + Echvi_0679 0.60 -0.9
763,861 + Echvi_0679 0.60 +2.4
763,861 + Echvi_0679 0.60 +0.8
763,861 + Echvi_0679 0.60 +0.8
763,861 + Echvi_0679 0.60 -0.4
763,862 - Echvi_0679 0.61 +0.9
763,862 - Echvi_0679 0.61 -0.2
763,862 - Echvi_0679 0.61 -1.1
763,862 - Echvi_0679 0.61 +1.7
763,926 + Echvi_0679 0.67 -1.1
763,926 + Echvi_0679 0.67 +0.4
763,926 + Echvi_0679 0.67 +0.5
763,926 + Echvi_0679 0.67 -0.8
763,927 - Echvi_0679 0.67 -0.6
763,950 + Echvi_0679 0.69 -0.6
763,950 + Echvi_0679 0.69 +1.6
763,950 + Echvi_0679 0.69 +0.7
763,951 - Echvi_0679 0.69 -0.1
763,994 + Echvi_0679 0.74 +0.8
764,046 + Echvi_0679 0.79 +1.6
764,047 - Echvi_0679 0.79 -0.5
764,103 + Echvi_0679 0.85 +2.0
764,103 + Echvi_0679 0.85 +0.1
764,231 + +1.3
764,231 + +0.5
764,305 + +1.0
764,329 - -0.2
764,352 - -0.1
764,388 - -0.5
764,392 + +2.0
764,416 + +1.4
764,568 - +1.0
764,590 + +1.7
764,591 - +1.2
764,630 + -0.4
764,640 - +1.7
764,676 - -1.0
764,687 + +0.6
764,688 - +1.1
764,931 + Echvi_0680 0.30 +0.3
764,986 + Echvi_0680 0.35 -1.6
764,987 - Echvi_0680 0.35 -0.6
765,049 + Echvi_0680 0.40 +0.8
765,049 + Echvi_0680 0.40 -0.9
765,050 - Echvi_0680 0.41 +0.8
765,050 - Echvi_0680 0.41 -1.6
765,070 + Echvi_0680 0.42 -1.1
765,071 - Echvi_0680 0.42 -0.9
765,071 - Echvi_0680 0.42 -0.1
765,071 - Echvi_0680 0.42 +0.3
765,075 + Echvi_0680 0.43 +0.7
765,076 - Echvi_0680 0.43 +1.9
765,150 - Echvi_0680 0.50 -0.6
765,150 - Echvi_0680 0.50 -1.1
765,210 + Echvi_0680 0.55 -0.8
765,210 + Echvi_0680 0.55 -0.6
765,211 - Echvi_0680 0.55 +0.4
765,211 - Echvi_0680 0.55 -1.6
765,338 - Echvi_0680 0.67 -0.8
765,459 - Echvi_0680 0.78 -0.7
765,459 - Echvi_0680 0.78 +1.7
765,644 + -0.2
765,644 + +1.3
765,644 + -0.7
765,705 + -0.6
765,706 - -0.6
765,714 + -1.7
765,714 + +2.0
765,714 + -0.1
765,715 - -0.3
765,715 - -0.2
765,721 + -0.7
765,722 - -0.2
765,848 + -0.2
765,848 + +0.8
765,849 - +3.6
765,849 - -1.9
765,849 - -1.3
765,849 - -0.7
765,849 - +0.7
765,852 + -1.6
765,852 + -0.1
765,853 - +1.1
765,917 - +0.1
765,968 - -0.6
765,997 + +0.1
765,997 + -0.9
766,109 - Echvi_0681 0.14 -1.0
766,114 - Echvi_0681 0.14 -0.2
766,171 + Echvi_0681 0.16 +0.1
766,172 - Echvi_0681 0.16 -1.2
766,306 - Echvi_0681 0.20 -0.4
766,312 + Echvi_0681 0.20 +0.0
766,375 - Echvi_0681 0.22 +0.8
766,448 - Echvi_0681 0.25 -0.6
766,573 + Echvi_0681 0.29 -1.1
766,574 - Echvi_0681 0.29 -0.6
766,574 - Echvi_0681 0.29 -1.7
766,579 + Echvi_0681 0.29 -2.4
766,579 + Echvi_0681 0.29 +1.5
766,584 + Echvi_0681 0.29 +0.7
766,584 + Echvi_0681 0.29 -0.6
766,605 + Echvi_0681 0.30 -0.2
766,638 + Echvi_0681 0.31 +0.5
766,639 - Echvi_0681 0.31 -1.1
766,639 - Echvi_0681 0.31 -0.6
766,639 - Echvi_0681 0.31 -0.6
766,664 - Echvi_0681 0.32 -0.2
766,670 + Echvi_0681 0.32 +0.3
766,670 + Echvi_0681 0.32 +0.3
766,671 - Echvi_0681 0.32 +0.5
766,673 - Echvi_0681 0.32 -0.3

Or see this region's nucleotide sequence