Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0603

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0602 and Echvi_0603 overlap by 20 nucleotidesEchvi_0603 and Echvi_0604 are separated by 221 nucleotidesEchvi_0604 and Echvi_0605 are separated by 68 nucleotides Echvi_0602: Echvi_0602 - hypothetical protein, at 678,733 to 680,112 _0602 Echvi_0603: Echvi_0603 - RNA polymerase sigma factor, sigma-70 family, at 680,093 to 680,641 _0603 Echvi_0604: Echvi_0604 - Predicted redox protein, regulator of disulfide bond formation, at 680,863 to 681,267 _0604 Echvi_0605: Echvi_0605 - hypothetical protein, at 681,336 to 682,067 _0605 Position (kb) 680 681Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 679.345 kb on + strand, within Echvi_0602at 680.117 kb on + strandat 680.126 kb on + strandat 680.126 kb on + strandat 680.172 kb on + strand, within Echvi_0603at 680.173 kb on - strand, within Echvi_0603at 680.227 kb on + strand, within Echvi_0603at 680.227 kb on + strand, within Echvi_0603at 680.228 kb on - strand, within Echvi_0603at 680.228 kb on - strand, within Echvi_0603at 680.229 kb on + strand, within Echvi_0603at 680.229 kb on + strand, within Echvi_0603at 680.229 kb on + strand, within Echvi_0603at 680.230 kb on - strand, within Echvi_0603at 680.230 kb on - strand, within Echvi_0603at 680.248 kb on + strand, within Echvi_0603at 680.248 kb on + strand, within Echvi_0603at 680.248 kb on + strand, within Echvi_0603at 680.249 kb on - strand, within Echvi_0603at 680.260 kb on + strand, within Echvi_0603at 680.261 kb on - strand, within Echvi_0603at 680.337 kb on + strand, within Echvi_0603at 680.385 kb on - strand, within Echvi_0603at 680.385 kb on - strand, within Echvi_0603at 680.401 kb on - strand, within Echvi_0603at 680.413 kb on + strand, within Echvi_0603at 680.414 kb on - strand, within Echvi_0603at 680.472 kb on - strand, within Echvi_0603at 680.492 kb on - strand, within Echvi_0603at 680.498 kb on - strand, within Echvi_0603at 680.557 kb on + strand, within Echvi_0603at 680.557 kb on + strand, within Echvi_0603at 680.558 kb on - strand, within Echvi_0603at 680.568 kb on + strand, within Echvi_0603at 680.568 kb on + strand, within Echvi_0603at 680.578 kb on + strand, within Echvi_0603at 680.605 kb on + strandat 680.631 kb on + strandat 680.631 kb on + strandat 680.631 kb on + strandat 680.631 kb on + strandat 680.654 kb on + strandat 680.654 kb on + strandat 680.661 kb on + strandat 680.661 kb on + strandat 680.662 kb on - strandat 680.662 kb on - strandat 680.672 kb on - strandat 680.686 kb on - strandat 680.700 kb on - strandat 680.700 kb on - strandat 680.712 kb on - strandat 680.734 kb on + strandat 680.766 kb on - strandat 680.790 kb on + strandat 680.790 kb on + strandat 680.791 kb on - strandat 680.843 kb on + strandat 680.843 kb on + strandat 681.022 kb on - strand, within Echvi_0604at 681.061 kb on - strand, within Echvi_0604at 681.086 kb on - strand, within Echvi_0604at 681.131 kb on - strand, within Echvi_0604at 681.259 kb on - strandat 681.259 kb on - strandat 681.262 kb on - strandat 681.295 kb on + strandat 681.296 kb on - strandat 681.296 kb on - strandat 681.300 kb on + strandat 681.300 kb on + strandat 681.300 kb on + strandat 681.300 kb on + strandat 681.300 kb on + strandat 681.300 kb on + strandat 681.301 kb on - strandat 681.321 kb on - strandat 681.328 kb on + strandat 681.335 kb on + strandat 681.335 kb on + strandat 681.354 kb on + strandat 681.394 kb on + strandat 681.423 kb on + strand, within Echvi_0605at 681.424 kb on - strand, within Echvi_0605at 681.455 kb on - strand, within Echvi_0605at 681.490 kb on + strand, within Echvi_0605at 681.491 kb on - strand, within Echvi_0605at 681.492 kb on + strand, within Echvi_0605at 681.492 kb on + strand, within Echvi_0605at 681.492 kb on + strand, within Echvi_0605at 681.493 kb on - strand, within Echvi_0605at 681.583 kb on - strand, within Echvi_0605at 681.583 kb on - strand, within Echvi_0605at 681.584 kb on + strand, within Echvi_0605at 681.627 kb on + strand, within Echvi_0605at 681.628 kb on - strand, within Echvi_0605at 681.635 kb on + strand, within Echvi_0605at 681.636 kb on - strand, within Echvi_0605at 681.636 kb on - strand, within Echvi_0605at 681.636 kb on - strand, within Echvi_0605

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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679,345 + Echvi_0602 0.44 +1.9
680,117 + -0.1
680,126 + -2.2
680,126 + -0.3
680,172 + Echvi_0603 0.14 +0.1
680,173 - Echvi_0603 0.15 +0.0
680,227 + Echvi_0603 0.24 +0.8
680,227 + Echvi_0603 0.24 -0.1
680,228 - Echvi_0603 0.25 +0.7
680,228 - Echvi_0603 0.25 -1.5
680,229 + Echvi_0603 0.25 -0.0
680,229 + Echvi_0603 0.25 -0.3
680,229 + Echvi_0603 0.25 -0.1
680,230 - Echvi_0603 0.25 -0.0
680,230 - Echvi_0603 0.25 -0.6
680,248 + Echvi_0603 0.28 +0.7
680,248 + Echvi_0603 0.28 +0.1
680,248 + Echvi_0603 0.28 +2.2
680,249 - Echvi_0603 0.28 +0.5
680,260 + Echvi_0603 0.30 +1.4
680,261 - Echvi_0603 0.31 +0.9
680,337 + Echvi_0603 0.44 +0.0
680,385 - Echvi_0603 0.53 +0.1
680,385 - Echvi_0603 0.53 -0.6
680,401 - Echvi_0603 0.56 +0.2
680,413 + Echvi_0603 0.58 -0.6
680,414 - Echvi_0603 0.58 +0.1
680,472 - Echvi_0603 0.69 +1.2
680,492 - Echvi_0603 0.73 -1.4
680,498 - Echvi_0603 0.74 +0.9
680,557 + Echvi_0603 0.85 +0.9
680,557 + Echvi_0603 0.85 -1.6
680,558 - Echvi_0603 0.85 +0.5
680,568 + Echvi_0603 0.87 -0.1
680,568 + Echvi_0603 0.87 +0.5
680,578 + Echvi_0603 0.88 +2.0
680,605 + +0.5
680,631 + -0.5
680,631 + +1.2
680,631 + +0.2
680,631 + -0.3
680,654 + +0.6
680,654 + -0.6
680,661 + +0.4
680,661 + +0.6
680,662 - +0.4
680,662 - +1.8
680,672 - +0.8
680,686 - -1.0
680,700 - +1.7
680,700 - +0.1
680,712 - +0.8
680,734 + -0.8
680,766 - -0.6
680,790 + +0.1
680,790 + -2.1
680,791 - -1.4
680,843 + -0.0
680,843 + -0.3
681,022 - Echvi_0604 0.39 -0.3
681,061 - Echvi_0604 0.49 +0.1
681,086 - Echvi_0604 0.55 +0.1
681,131 - Echvi_0604 0.66 -0.8
681,259 - -0.4
681,259 - +0.4
681,262 - -0.2
681,295 + +0.0
681,296 - +0.6
681,296 - +0.7
681,300 + +0.7
681,300 + -0.2
681,300 + +0.4
681,300 + +1.3
681,300 + -1.1
681,300 + -0.1
681,301 - +1.8
681,321 - +1.0
681,328 + -0.9
681,335 + -0.7
681,335 + -0.9
681,354 + +1.6
681,394 + +0.2
681,423 + Echvi_0605 0.12 +0.1
681,424 - Echvi_0605 0.12 +1.1
681,455 - Echvi_0605 0.16 +0.2
681,490 + Echvi_0605 0.21 -3.3
681,491 - Echvi_0605 0.21 -2.1
681,492 + Echvi_0605 0.21 +0.7
681,492 + Echvi_0605 0.21 +0.1
681,492 + Echvi_0605 0.21 +0.1
681,493 - Echvi_0605 0.21 +0.2
681,583 - Echvi_0605 0.34 +0.5
681,583 - Echvi_0605 0.34 -1.3
681,584 + Echvi_0605 0.34 -0.2
681,627 + Echvi_0605 0.40 -0.5
681,628 - Echvi_0605 0.40 +0.1
681,635 + Echvi_0605 0.41 -0.1
681,636 - Echvi_0605 0.41 -1.0
681,636 - Echvi_0605 0.41 +0.3
681,636 - Echvi_0605 0.41 +0.8

Or see this region's nucleotide sequence