Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0580

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0579 and Echvi_0580 are separated by 124 nucleotidesEchvi_0580 and Echvi_0581 overlap by 47 nucleotidesEchvi_0581 and Echvi_0582 are separated by 129 nucleotides Echvi_0579: Echvi_0579 - ammonium transporter, at 656,594 to 657,904 _0579 Echvi_0580: Echvi_0580 - hypothetical protein, at 658,029 to 659,177 _0580 Echvi_0581: Echvi_0581 - hypothetical protein, at 659,131 to 659,361 _0581 Echvi_0582: Echvi_0582 - hypothetical protein, at 659,491 to 659,802 _0582 Position (kb) 658 659 660Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 657.098 kb on + strand, within Echvi_0579at 657.098 kb on + strand, within Echvi_0579at 657.098 kb on + strand, within Echvi_0579at 657.099 kb on - strand, within Echvi_0579at 657.099 kb on - strand, within Echvi_0579at 657.099 kb on - strand, within Echvi_0579at 657.099 kb on - strand, within Echvi_0579at 657.099 kb on - strand, within Echvi_0579at 657.111 kb on + strand, within Echvi_0579at 657.111 kb on + strand, within Echvi_0579at 657.112 kb on - strand, within Echvi_0579at 657.118 kb on + strand, within Echvi_0579at 657.118 kb on + strand, within Echvi_0579at 657.119 kb on - strand, within Echvi_0579at 657.119 kb on - strand, within Echvi_0579at 657.187 kb on + strand, within Echvi_0579at 657.188 kb on - strand, within Echvi_0579at 657.188 kb on - strand, within Echvi_0579at 657.205 kb on - strand, within Echvi_0579at 657.233 kb on - strand, within Echvi_0579at 657.251 kb on - strand, within Echvi_0579at 657.260 kb on + strand, within Echvi_0579at 657.261 kb on - strand, within Echvi_0579at 657.261 kb on - strand, within Echvi_0579at 657.261 kb on - strand, within Echvi_0579at 657.265 kb on - strand, within Echvi_0579at 657.301 kb on - strand, within Echvi_0579at 657.301 kb on - strand, within Echvi_0579at 657.301 kb on - strand, within Echvi_0579at 657.400 kb on - strand, within Echvi_0579at 657.465 kb on + strand, within Echvi_0579at 657.470 kb on - strand, within Echvi_0579at 657.503 kb on - strand, within Echvi_0579at 657.526 kb on + strand, within Echvi_0579at 657.526 kb on + strand, within Echvi_0579at 657.568 kb on - strand, within Echvi_0579at 657.568 kb on - strand, within Echvi_0579at 657.568 kb on - strand, within Echvi_0579at 657.570 kb on + strand, within Echvi_0579at 657.589 kb on - strand, within Echvi_0579at 657.589 kb on - strand, within Echvi_0579at 657.794 kb on + strandat 657.794 kb on + strandat 657.795 kb on - strandat 657.795 kb on - strandat 657.795 kb on - strandat 657.795 kb on - strandat 657.795 kb on - strandat 657.882 kb on - strandat 657.882 kb on - strandat 657.894 kb on - strandat 657.926 kb on + strandat 657.927 kb on - strandat 657.927 kb on - strandat 657.927 kb on - strandat 657.980 kb on - strandat 657.980 kb on - strandat 658.004 kb on - strandat 658.016 kb on - strandat 658.049 kb on - strandat 658.049 kb on - strandat 658.055 kb on - strandat 658.060 kb on + strandat 658.067 kb on - strandat 658.126 kb on + strandat 658.126 kb on + strandat 658.127 kb on - strandat 658.127 kb on - strandat 658.127 kb on - strandat 658.127 kb on - strandat 658.135 kb on - strandat 658.137 kb on + strandat 658.258 kb on - strand, within Echvi_0580at 658.305 kb on - strand, within Echvi_0580at 658.352 kb on - strand, within Echvi_0580at 658.362 kb on + strand, within Echvi_0580at 658.362 kb on + strand, within Echvi_0580at 658.362 kb on + strand, within Echvi_0580at 658.362 kb on + strand, within Echvi_0580at 658.363 kb on - strand, within Echvi_0580at 658.363 kb on - strand, within Echvi_0580at 658.363 kb on - strand, within Echvi_0580at 658.364 kb on + strand, within Echvi_0580at 658.365 kb on - strand, within Echvi_0580at 658.365 kb on - strand, within Echvi_0580at 658.365 kb on - strand, within Echvi_0580at 658.368 kb on + strand, within Echvi_0580at 658.369 kb on - strand, within Echvi_0580at 658.369 kb on - strand, within Echvi_0580at 658.369 kb on - strand, within Echvi_0580at 658.398 kb on - strand, within Echvi_0580at 658.473 kb on + strand, within Echvi_0580at 658.473 kb on + strand, within Echvi_0580at 658.474 kb on - strand, within Echvi_0580at 658.474 kb on - strand, within Echvi_0580at 658.706 kb on + strand, within Echvi_0580at 658.707 kb on - strand, within Echvi_0580at 658.707 kb on - strand, within Echvi_0580at 658.783 kb on - strand, within Echvi_0580at 658.794 kb on - strand, within Echvi_0580at 658.803 kb on + strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.805 kb on + strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.878 kb on + strand, within Echvi_0580at 658.878 kb on + strand, within Echvi_0580at 658.879 kb on - strand, within Echvi_0580at 658.879 kb on - strand, within Echvi_0580at 658.897 kb on + strand, within Echvi_0580at 658.898 kb on - strand, within Echvi_0580at 658.898 kb on - strand, within Echvi_0580at 658.917 kb on - strand, within Echvi_0580at 658.934 kb on - strand, within Echvi_0580at 658.945 kb on - strand, within Echvi_0580at 658.949 kb on + strand, within Echvi_0580at 658.955 kb on - strand, within Echvi_0580at 658.955 kb on - strand, within Echvi_0580at 659.048 kb on - strand, within Echvi_0580at 659.048 kb on - strand, within Echvi_0580at 659.064 kb on - strandat 659.074 kb on + strandat 659.251 kb on + strand, within Echvi_0581at 659.450 kb on - strandat 659.450 kb on - strandat 659.483 kb on - strandat 659.496 kb on + strandat 659.508 kb on + strandat 659.603 kb on - strand, within Echvi_0582at 659.626 kb on - strand, within Echvi_0582at 659.639 kb on + strand, within Echvi_0582at 659.640 kb on - strand, within Echvi_0582at 659.664 kb on - strand, within Echvi_0582at 659.664 kb on - strand, within Echvi_0582at 659.664 kb on - strand, within Echvi_0582at 659.727 kb on + strand, within Echvi_0582at 659.728 kb on - strand, within Echvi_0582at 659.812 kb on + strandat 659.840 kb on + strandat 659.864 kb on + strandat 659.884 kb on + strandat 659.951 kb on + strandat 659.952 kb on - strandat 660.060 kb on + strandat 660.093 kb on + strandat 660.093 kb on + strandat 660.096 kb on + strandat 660.097 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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657,098 + Echvi_0579 0.38 +1.7
657,098 + Echvi_0579 0.38 +0.7
657,098 + Echvi_0579 0.38 +1.1
657,099 - Echvi_0579 0.39 -0.5
657,099 - Echvi_0579 0.39 -1.3
657,099 - Echvi_0579 0.39 +0.1
657,099 - Echvi_0579 0.39 +1.2
657,099 - Echvi_0579 0.39 +0.4
657,111 + Echvi_0579 0.39 +0.1
657,111 + Echvi_0579 0.39 +1.7
657,112 - Echvi_0579 0.40 -1.3
657,118 + Echvi_0579 0.40 +0.6
657,118 + Echvi_0579 0.40 +0.7
657,119 - Echvi_0579 0.40 +0.7
657,119 - Echvi_0579 0.40 -0.3
657,187 + Echvi_0579 0.45 +1.1
657,188 - Echvi_0579 0.45 +0.4
657,188 - Echvi_0579 0.45 -0.8
657,205 - Echvi_0579 0.47 +0.9
657,233 - Echvi_0579 0.49 -1.5
657,251 - Echvi_0579 0.50 -1.3
657,260 + Echvi_0579 0.51 +1.4
657,261 - Echvi_0579 0.51 +1.1
657,261 - Echvi_0579 0.51 -1.5
657,261 - Echvi_0579 0.51 -1.1
657,265 - Echvi_0579 0.51 -0.7
657,301 - Echvi_0579 0.54 -0.5
657,301 - Echvi_0579 0.54 +0.4
657,301 - Echvi_0579 0.54 +0.9
657,400 - Echvi_0579 0.61 +0.4
657,465 + Echvi_0579 0.66 +1.0
657,470 - Echvi_0579 0.67 -1.8
657,503 - Echvi_0579 0.69 -0.7
657,526 + Echvi_0579 0.71 +0.1
657,526 + Echvi_0579 0.71 +0.7
657,568 - Echvi_0579 0.74 +1.2
657,568 - Echvi_0579 0.74 -0.1
657,568 - Echvi_0579 0.74 +0.7
657,570 + Echvi_0579 0.74 +2.7
657,589 - Echvi_0579 0.76 -0.0
657,589 - Echvi_0579 0.76 +0.0
657,794 + +1.9
657,794 + +1.6
657,795 - -1.1
657,795 - +0.5
657,795 - -0.1
657,795 - -0.4
657,795 - -2.6
657,882 - -0.4
657,882 - +0.9
657,894 - -0.1
657,926 + +1.7
657,927 - +1.1
657,927 - -0.5
657,927 - -0.7
657,980 - +1.2
657,980 - -0.3
658,004 - -0.1
658,016 - +0.4
658,049 - -1.0
658,049 - -0.9
658,055 - +0.7
658,060 + -0.5
658,067 - -0.4
658,126 + +1.0
658,126 + -1.1
658,127 - +0.6
658,127 - -0.3
658,127 - -0.1
658,127 - +2.5
658,135 - +0.1
658,137 + +0.7
658,258 - Echvi_0580 0.20 -0.1
658,305 - Echvi_0580 0.24 +0.9
658,352 - Echvi_0580 0.28 -0.1
658,362 + Echvi_0580 0.29 -0.3
658,362 + Echvi_0580 0.29 -0.9
658,362 + Echvi_0580 0.29 +0.1
658,362 + Echvi_0580 0.29 +1.8
658,363 - Echvi_0580 0.29 -0.2
658,363 - Echvi_0580 0.29 -0.6
658,363 - Echvi_0580 0.29 +0.9
658,364 + Echvi_0580 0.29 -0.5
658,365 - Echvi_0580 0.29 +0.1
658,365 - Echvi_0580 0.29 +0.0
658,365 - Echvi_0580 0.29 +0.4
658,368 + Echvi_0580 0.30 +0.3
658,369 - Echvi_0580 0.30 +0.4
658,369 - Echvi_0580 0.30 -1.3
658,369 - Echvi_0580 0.30 +0.3
658,398 - Echvi_0580 0.32 +0.8
658,473 + Echvi_0580 0.39 +1.6
658,473 + Echvi_0580 0.39 +1.0
658,474 - Echvi_0580 0.39 +0.9
658,474 - Echvi_0580 0.39 +0.1
658,706 + Echvi_0580 0.59 +0.2
658,707 - Echvi_0580 0.59 -2.2
658,707 - Echvi_0580 0.59 +1.3
658,783 - Echvi_0580 0.66 +0.0
658,794 - Echvi_0580 0.67 -0.1
658,803 + Echvi_0580 0.67 -0.6
658,804 - Echvi_0580 0.67 +1.7
658,804 - Echvi_0580 0.67 -0.9
658,804 - Echvi_0580 0.67 +1.1
658,804 - Echvi_0580 0.67 -1.3
658,804 - Echvi_0580 0.67 -0.4
658,805 + Echvi_0580 0.68 +1.4
658,806 - Echvi_0580 0.68 +0.1
658,806 - Echvi_0580 0.68 -1.9
658,806 - Echvi_0580 0.68 +0.3
658,806 - Echvi_0580 0.68 +0.0
658,806 - Echvi_0580 0.68 -0.2
658,806 - Echvi_0580 0.68 +0.6
658,806 - Echvi_0580 0.68 -0.1
658,878 + Echvi_0580 0.74 +1.3
658,878 + Echvi_0580 0.74 +0.7
658,879 - Echvi_0580 0.74 +1.4
658,879 - Echvi_0580 0.74 -0.3
658,897 + Echvi_0580 0.76 +2.9
658,898 - Echvi_0580 0.76 +0.5
658,898 - Echvi_0580 0.76 +0.6
658,917 - Echvi_0580 0.77 +0.3
658,934 - Echvi_0580 0.79 +0.2
658,945 - Echvi_0580 0.80 +0.4
658,949 + Echvi_0580 0.80 +1.2
658,955 - Echvi_0580 0.81 -0.3
658,955 - Echvi_0580 0.81 -0.2
659,048 - Echvi_0580 0.89 +0.0
659,048 - Echvi_0580 0.89 -1.0
659,064 - -0.3
659,074 + +1.4
659,251 + Echvi_0581 0.52 +0.7
659,450 - +0.6
659,450 - -0.2
659,483 - +0.3
659,496 + +0.2
659,508 + +2.0
659,603 - Echvi_0582 0.36 +1.0
659,626 - Echvi_0582 0.43 +0.1
659,639 + Echvi_0582 0.47 +0.9
659,640 - Echvi_0582 0.48 +0.5
659,664 - Echvi_0582 0.55 -0.3
659,664 - Echvi_0582 0.55 -0.7
659,664 - Echvi_0582 0.55 +0.9
659,727 + Echvi_0582 0.76 -0.7
659,728 - Echvi_0582 0.76 +0.1
659,812 + +1.0
659,840 + +0.8
659,864 + -0.3
659,884 + +0.1
659,951 + -0.3
659,952 - +1.1
660,060 + -0.9
660,093 + -1.3
660,093 + +1.0
660,096 + -3.2
660,097 - -0.2

Or see this region's nucleotide sequence