Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0495 and Echvi_0496 are separated by 18 nucleotides Echvi_0496 and Echvi_0497 are separated by 198 nucleotides
Echvi_0495: Echvi_0495 - Beta-xylosidase, at 551,303 to 552,301
_0495
Echvi_0496: Echvi_0496 - Beta-xylosidase, at 552,320 to 553,318
_0496
Echvi_0497: Echvi_0497 - Beta-xylosidase, at 553,517 to 554,560
_0497
Position (kb) 552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 551.362 kb on + strand at 551.541 kb on + strand, within Echvi_0495 at 551.541 kb on + strand, within Echvi_0495 at 551.684 kb on + strand, within Echvi_0495 at 551.687 kb on + strand, within Echvi_0495 at 551.687 kb on + strand, within Echvi_0495 at 551.688 kb on - strand, within Echvi_0495 at 551.785 kb on + strand, within Echvi_0495 at 551.787 kb on + strand, within Echvi_0495 at 551.787 kb on + strand, within Echvi_0495 at 551.788 kb on - strand, within Echvi_0495 at 551.788 kb on - strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.901 kb on - strand, within Echvi_0495 at 551.901 kb on - strand, within Echvi_0495 at 551.982 kb on + strand, within Echvi_0495 at 551.983 kb on - strand, within Echvi_0495 at 551.986 kb on - strand, within Echvi_0495 at 551.986 kb on - strand, within Echvi_0495 at 551.995 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.998 kb on - strand, within Echvi_0495 at 552.133 kb on + strand, within Echvi_0495 at 552.133 kb on + strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.138 kb on + strand, within Echvi_0495 at 552.138 kb on + strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.164 kb on + strand, within Echvi_0495 at 552.166 kb on + strand, within Echvi_0495 at 552.167 kb on - strand, within Echvi_0495 at 552.324 kb on + strand at 552.324 kb on + strand at 552.325 kb on - strand at 552.387 kb on + strand at 552.453 kb on + strand, within Echvi_0496 at 552.453 kb on + strand, within Echvi_0496 at 552.453 kb on + strand, within Echvi_0496 at 552.454 kb on - strand, within Echvi_0496 at 552.462 kb on + strand, within Echvi_0496 at 552.463 kb on - strand, within Echvi_0496 at 552.476 kb on - strand, within Echvi_0496 at 552.502 kb on + strand, within Echvi_0496 at 552.571 kb on + strand, within Echvi_0496 at 552.572 kb on - strand, within Echvi_0496 at 552.577 kb on - strand, within Echvi_0496 at 552.618 kb on + strand, within Echvi_0496 at 552.618 kb on + strand, within Echvi_0496 at 552.618 kb on + strand, within Echvi_0496 at 552.619 kb on - strand, within Echvi_0496 at 552.619 kb on - strand, within Echvi_0496 at 552.620 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.710 kb on - strand, within Echvi_0496 at 552.710 kb on - strand, within Echvi_0496 at 552.718 kb on + strand, within Echvi_0496 at 552.719 kb on - strand, within Echvi_0496 at 552.729 kb on + strand, within Echvi_0496 at 552.730 kb on - strand, within Echvi_0496 at 552.730 kb on - strand, within Echvi_0496 at 552.732 kb on + strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.929 kb on - strand, within Echvi_0496 at 552.929 kb on - strand, within Echvi_0496 at 552.930 kb on + strand, within Echvi_0496 at 552.930 kb on + strand, within Echvi_0496 at 552.931 kb on - strand, within Echvi_0496 at 552.931 kb on - strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.937 kb on - strand, within Echvi_0496 at 552.939 kb on + strand, within Echvi_0496 at 552.940 kb on - strand, within Echvi_0496 at 552.943 kb on + strand, within Echvi_0496 at 552.944 kb on - strand, within Echvi_0496 at 552.944 kb on - strand, within Echvi_0496 at 552.972 kb on + strand, within Echvi_0496 at 552.973 kb on - strand, within Echvi_0496 at 553.081 kb on + strand, within Echvi_0496 at 553.082 kb on - strand, within Echvi_0496 at 553.119 kb on + strand, within Echvi_0496 at 553.167 kb on + strand, within Echvi_0496 at 553.167 kb on + strand, within Echvi_0496 at 553.167 kb on + strand, within Echvi_0496 at 553.168 kb on - strand, within Echvi_0496 at 553.212 kb on + strand, within Echvi_0496 at 553.212 kb on + strand, within Echvi_0496 at 553.212 kb on + strand, within Echvi_0496 at 553.213 kb on - strand, within Echvi_0496 at 553.213 kb on - strand, within Echvi_0496 at 553.233 kb on + strand at 553.234 kb on - strand at 553.234 kb on - strand at 553.234 kb on - strand at 553.268 kb on - strand at 553.311 kb on - strand at 553.326 kb on + strand at 553.346 kb on - strand at 553.349 kb on - strand at 553.349 kb on - strand at 553.379 kb on + strand at 553.466 kb on + strand at 553.466 kb on + strand at 553.466 kb on + strand at 553.467 kb on - strand at 553.467 kb on - strand at 553.562 kb on + strand at 553.563 kb on - strand at 553.600 kb on + strand at 553.601 kb on - strand at 553.667 kb on - strand, within Echvi_0497 at 553.669 kb on + strand, within Echvi_0497 at 553.669 kb on + strand, within Echvi_0497 at 553.670 kb on - strand, within Echvi_0497 at 553.683 kb on + strand, within Echvi_0497 at 553.683 kb on + strand, within Echvi_0497 at 553.684 kb on - strand, within Echvi_0497 at 553.698 kb on + strand, within Echvi_0497 at 553.708 kb on - strand, within Echvi_0497 at 553.708 kb on - strand, within Echvi_0497 at 553.736 kb on + strand, within Echvi_0497 at 553.783 kb on - strand, within Echvi_0497 at 553.783 kb on - strand, within Echvi_0497 at 553.787 kb on - strand, within Echvi_0497 at 553.795 kb on - strand, within Echvi_0497 at 553.799 kb on - strand, within Echvi_0497 at 553.876 kb on + strand, within Echvi_0497 at 553.886 kb on - strand, within Echvi_0497 at 553.908 kb on + strand, within Echvi_0497 at 553.950 kb on + strand, within Echvi_0497 at 553.950 kb on + strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 554.057 kb on - strand, within Echvi_0497 at 554.071 kb on - strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.147 kb on - strand, within Echvi_0497 at 554.160 kb on - strand, within Echvi_0497
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 551,362 + -1.2 551,541 + Echvi_0495 0.24 -0.4 551,541 + Echvi_0495 0.24 +0.1 551,684 + Echvi_0495 0.38 -0.2 551,687 + Echvi_0495 0.38 -1.5 551,687 + Echvi_0495 0.38 +0.6 551,688 - Echvi_0495 0.39 -0.3 551,785 + Echvi_0495 0.48 +0.1 551,787 + Echvi_0495 0.48 -0.5 551,787 + Echvi_0495 0.48 +1.2 551,788 - Echvi_0495 0.49 -0.5 551,788 - Echvi_0495 0.49 -1.0 551,900 + Echvi_0495 0.60 -0.3 551,900 + Echvi_0495 0.60 -1.1 551,900 + Echvi_0495 0.60 -2.2 551,901 - Echvi_0495 0.60 +0.0 551,901 - Echvi_0495 0.60 +0.5 551,982 + Echvi_0495 0.68 -1.1 551,983 - Echvi_0495 0.68 +0.1 551,986 - Echvi_0495 0.68 -0.5 551,986 - Echvi_0495 0.68 -0.1 551,995 + Echvi_0495 0.69 +0.1 551,997 + Echvi_0495 0.69 -1.4 551,997 + Echvi_0495 0.69 -1.0 551,997 + Echvi_0495 0.69 -0.6 551,998 - Echvi_0495 0.70 -1.4 552,133 + Echvi_0495 0.83 -1.6 552,133 + Echvi_0495 0.83 +0.3 552,134 - Echvi_0495 0.83 -1.6 552,134 - Echvi_0495 0.83 +0.6 552,134 - Echvi_0495 0.83 -1.9 552,136 - Echvi_0495 0.83 -1.7 552,136 - Echvi_0495 0.83 -0.5 552,136 - Echvi_0495 0.83 +0.8 552,136 - Echvi_0495 0.83 -1.6 552,136 - Echvi_0495 0.83 +0.6 552,136 - Echvi_0495 0.83 -0.2 552,138 + Echvi_0495 0.84 +2.4 552,138 + Echvi_0495 0.84 +0.1 552,139 - Echvi_0495 0.84 -0.3 552,139 - Echvi_0495 0.84 +1.4 552,139 - Echvi_0495 0.84 -0.4 552,164 + Echvi_0495 0.86 -0.4 552,166 + Echvi_0495 0.86 +0.1 552,167 - Echvi_0495 0.86 +0.1 552,324 + -0.4 552,324 + -0.8 552,325 - +0.6 552,387 + +0.9 552,453 + Echvi_0496 0.13 -0.3 552,453 + Echvi_0496 0.13 +0.2 552,453 + Echvi_0496 0.13 +0.4 552,454 - Echvi_0496 0.13 -0.1 552,462 + Echvi_0496 0.14 -0.3 552,463 - Echvi_0496 0.14 -0.2 552,476 - Echvi_0496 0.16 -0.1 552,502 + Echvi_0496 0.18 -0.1 552,571 + Echvi_0496 0.25 -1.5 552,572 - Echvi_0496 0.25 +0.2 552,577 - Echvi_0496 0.26 -0.3 552,618 + Echvi_0496 0.30 -1.2 552,618 + Echvi_0496 0.30 -1.8 552,618 + Echvi_0496 0.30 -0.9 552,619 - Echvi_0496 0.30 +1.1 552,619 - Echvi_0496 0.30 +0.3 552,620 + Echvi_0496 0.30 -0.8 552,709 + Echvi_0496 0.39 +1.2 552,709 + Echvi_0496 0.39 +0.4 552,709 + Echvi_0496 0.39 +0.5 552,709 + Echvi_0496 0.39 -0.4 552,710 - Echvi_0496 0.39 -2.3 552,710 - Echvi_0496 0.39 -0.3 552,718 + Echvi_0496 0.40 +0.5 552,719 - Echvi_0496 0.40 -0.4 552,729 + Echvi_0496 0.41 -2.1 552,730 - Echvi_0496 0.41 +0.2 552,730 - Echvi_0496 0.41 -0.2 552,732 + Echvi_0496 0.41 +2.9 552,733 - Echvi_0496 0.41 -1.1 552,733 - Echvi_0496 0.41 +0.4 552,733 - Echvi_0496 0.41 +0.3 552,733 - Echvi_0496 0.41 -0.0 552,929 - Echvi_0496 0.61 -1.0 552,929 - Echvi_0496 0.61 -0.5 552,930 + Echvi_0496 0.61 -0.2 552,930 + Echvi_0496 0.61 +0.0 552,931 - Echvi_0496 0.61 +0.2 552,931 - Echvi_0496 0.61 +0.3 552,936 + Echvi_0496 0.62 +1.1 552,936 + Echvi_0496 0.62 +0.3 552,936 + Echvi_0496 0.62 -0.5 552,936 + Echvi_0496 0.62 +0.6 552,936 + Echvi_0496 0.62 -1.1 552,936 + Echvi_0496 0.62 +0.0 552,937 - Echvi_0496 0.62 +0.5 552,939 + Echvi_0496 0.62 +0.1 552,940 - Echvi_0496 0.62 +0.1 552,943 + Echvi_0496 0.62 -0.5 552,944 - Echvi_0496 0.62 -2.2 552,944 - Echvi_0496 0.62 -0.1 552,972 + Echvi_0496 0.65 -2.2 552,973 - Echvi_0496 0.65 +0.2 553,081 + Echvi_0496 0.76 -0.3 553,082 - Echvi_0496 0.76 +0.0 553,119 + Echvi_0496 0.80 +1.0 553,167 + Echvi_0496 0.85 +0.7 553,167 + Echvi_0496 0.85 +0.1 553,167 + Echvi_0496 0.85 -1.3 553,168 - Echvi_0496 0.85 +1.9 553,212 + Echvi_0496 0.89 -0.2 553,212 + Echvi_0496 0.89 -0.9 553,212 + Echvi_0496 0.89 -0.3 553,213 - Echvi_0496 0.89 -0.7 553,213 - Echvi_0496 0.89 +0.0 553,233 + +0.8 553,234 - +0.3 553,234 - -0.8 553,234 - -0.0 553,268 - +0.2 553,311 - +1.2 553,326 + +0.1 553,346 - -0.5 553,349 - +0.7 553,349 - -1.2 553,379 + -2.7 553,466 + +0.2 553,466 + +0.2 553,466 + +0.5 553,467 - +0.1 553,467 - -0.7 553,562 + +1.2 553,563 - -2.3 553,600 + -0.4 553,601 - +0.8 553,667 - Echvi_0497 0.14 +1.1 553,669 + Echvi_0497 0.15 -1.8 553,669 + Echvi_0497 0.15 +1.4 553,670 - Echvi_0497 0.15 +1.4 553,683 + Echvi_0497 0.16 -1.8 553,683 + Echvi_0497 0.16 -0.8 553,684 - Echvi_0497 0.16 +0.6 553,698 + Echvi_0497 0.17 +0.1 553,708 - Echvi_0497 0.18 +0.1 553,708 - Echvi_0497 0.18 +0.9 553,736 + Echvi_0497 0.21 -0.9 553,783 - Echvi_0497 0.25 +2.1 553,783 - Echvi_0497 0.25 +0.6 553,787 - Echvi_0497 0.26 +1.0 553,795 - Echvi_0497 0.27 +1.5 553,799 - Echvi_0497 0.27 -0.2 553,876 + Echvi_0497 0.34 -0.9 553,886 - Echvi_0497 0.35 +0.8 553,908 + Echvi_0497 0.37 +0.2 553,950 + Echvi_0497 0.41 +0.3 553,950 + Echvi_0497 0.41 -1.0 553,951 - Echvi_0497 0.42 -0.3 553,951 - Echvi_0497 0.42 -1.1 553,951 - Echvi_0497 0.42 +0.9 553,951 - Echvi_0497 0.42 -0.0 554,057 - Echvi_0497 0.52 +0.2 554,071 - Echvi_0497 0.53 +0.8 554,146 + Echvi_0497 0.60 -0.9 554,146 + Echvi_0497 0.60 +0.6 554,146 + Echvi_0497 0.60 -1.5 554,146 + Echvi_0497 0.60 -1.6 554,147 - Echvi_0497 0.60 -0.1 554,160 - Echvi_0497 0.62 -0.7
Or see this region's nucleotide sequence