Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0492 and Echvi_0493 are separated by 14 nucleotides Echvi_0493 and Echvi_0494 are separated by 250 nucleotides
Echvi_0492: Echvi_0492 - SusD family., at 545,162 to 546,847
_0492
Echvi_0493: Echvi_0493 - TonB-linked outer membrane protein, SusC/RagA family, at 546,862 to 549,831
_0493
Echvi_0494: Echvi_0494 - hypothetical protein, at 550,082 to 551,230
_0494
Position (kb) 546
547
548
549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 546.080 kb on + strand, within Echvi_0492 at 546.081 kb on - strand, within Echvi_0492 at 546.115 kb on + strand, within Echvi_0492 at 546.156 kb on + strand, within Echvi_0492 at 546.159 kb on - strand, within Echvi_0492 at 546.268 kb on + strand, within Echvi_0492 at 546.269 kb on - strand, within Echvi_0492 at 546.335 kb on + strand, within Echvi_0492 at 546.367 kb on + strand, within Echvi_0492 at 546.372 kb on + strand, within Echvi_0492 at 546.373 kb on - strand, within Echvi_0492 at 546.458 kb on - strand, within Echvi_0492 at 546.481 kb on + strand, within Echvi_0492 at 546.498 kb on + strand, within Echvi_0492 at 546.498 kb on + strand, within Echvi_0492 at 546.499 kb on - strand, within Echvi_0492 at 546.499 kb on - strand, within Echvi_0492 at 546.510 kb on - strand, within Echvi_0492 at 546.514 kb on + strand, within Echvi_0492 at 546.514 kb on + strand, within Echvi_0492 at 546.549 kb on + strand, within Echvi_0492 at 546.655 kb on + strand, within Echvi_0492 at 546.670 kb on - strand, within Echvi_0492 at 546.675 kb on + strand, within Echvi_0492 at 546.676 kb on - strand, within Echvi_0492 at 546.676 kb on - strand, within Echvi_0492 at 546.747 kb on - strand at 546.796 kb on + strand at 546.797 kb on - strand at 546.816 kb on - strand at 546.821 kb on + strand at 546.839 kb on + strand at 546.839 kb on + strand at 546.839 kb on + strand at 546.841 kb on + strand at 546.841 kb on + strand at 546.863 kb on + strand at 546.871 kb on + strand at 546.876 kb on + strand at 546.908 kb on + strand at 546.908 kb on + strand at 546.908 kb on + strand at 546.908 kb on + strand at 546.912 kb on + strand at 547.031 kb on + strand at 547.031 kb on + strand at 547.032 kb on - strand at 547.032 kb on - strand at 547.061 kb on + strand at 547.091 kb on + strand at 547.091 kb on + strand at 547.095 kb on + strand at 547.095 kb on + strand at 547.095 kb on + strand at 547.096 kb on - strand at 547.096 kb on - strand at 547.096 kb on - strand at 547.097 kb on + strand at 547.097 kb on + strand at 547.098 kb on - strand at 547.098 kb on - strand at 547.098 kb on - strand at 547.133 kb on + strand at 547.133 kb on + strand at 547.134 kb on - strand at 547.134 kb on - strand at 547.187 kb on + strand, within Echvi_0493 at 547.187 kb on + strand, within Echvi_0493 at 547.188 kb on - strand, within Echvi_0493 at 547.464 kb on + strand, within Echvi_0493 at 547.465 kb on - strand, within Echvi_0493 at 547.465 kb on - strand, within Echvi_0493 at 547.509 kb on + strand, within Echvi_0493 at 547.528 kb on - strand, within Echvi_0493 at 547.528 kb on - strand, within Echvi_0493 at 547.559 kb on - strand, within Echvi_0493 at 547.569 kb on + strand, within Echvi_0493 at 547.569 kb on + strand, within Echvi_0493 at 547.571 kb on + strand, within Echvi_0493 at 547.572 kb on - strand, within Echvi_0493 at 547.691 kb on + strand, within Echvi_0493 at 547.692 kb on - strand, within Echvi_0493 at 547.692 kb on - strand, within Echvi_0493 at 547.708 kb on + strand, within Echvi_0493 at 547.728 kb on + strand, within Echvi_0493 at 547.728 kb on + strand, within Echvi_0493 at 547.729 kb on - strand, within Echvi_0493 at 547.747 kb on - strand, within Echvi_0493 at 547.748 kb on + strand, within Echvi_0493 at 547.773 kb on + strand, within Echvi_0493 at 547.856 kb on + strand, within Echvi_0493 at 547.856 kb on + strand, within Echvi_0493 at 547.857 kb on - strand, within Echvi_0493 at 547.903 kb on - strand, within Echvi_0493 at 547.933 kb on + strand, within Echvi_0493 at 547.935 kb on + strand, within Echvi_0493 at 547.935 kb on + strand, within Echvi_0493 at 547.936 kb on - strand, within Echvi_0493 at 547.936 kb on - strand, within Echvi_0493 at 547.975 kb on + strand, within Echvi_0493 at 548.061 kb on + strand, within Echvi_0493 at 548.062 kb on - strand, within Echvi_0493 at 548.121 kb on - strand, within Echvi_0493 at 548.133 kb on - strand, within Echvi_0493 at 548.138 kb on + strand, within Echvi_0493 at 548.138 kb on + strand, within Echvi_0493 at 548.138 kb on + strand, within Echvi_0493 at 548.138 kb on + strand, within Echvi_0493 at 548.138 kb on + strand, within Echvi_0493 at 548.139 kb on - strand, within Echvi_0493 at 548.139 kb on - strand, within Echvi_0493 at 548.171 kb on + strand, within Echvi_0493 at 548.175 kb on + strand, within Echvi_0493 at 548.176 kb on - strand, within Echvi_0493 at 548.205 kb on + strand, within Echvi_0493 at 548.241 kb on + strand, within Echvi_0493 at 548.389 kb on + strand, within Echvi_0493 at 548.389 kb on + strand, within Echvi_0493 at 548.389 kb on + strand, within Echvi_0493 at 548.389 kb on + strand, within Echvi_0493 at 548.390 kb on - strand, within Echvi_0493 at 548.415 kb on - strand, within Echvi_0493 at 548.424 kb on + strand, within Echvi_0493 at 548.425 kb on - strand, within Echvi_0493 at 548.430 kb on + strand, within Echvi_0493 at 548.430 kb on + strand, within Echvi_0493 at 548.430 kb on + strand, within Echvi_0493 at 548.430 kb on + strand, within Echvi_0493 at 548.431 kb on - strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.462 kb on + strand, within Echvi_0493 at 548.463 kb on - strand, within Echvi_0493 at 548.463 kb on - strand, within Echvi_0493 at 548.463 kb on - strand, within Echvi_0493 at 548.463 kb on - strand, within Echvi_0493 at 548.463 kb on - strand, within Echvi_0493 at 548.463 kb on - strand, within Echvi_0493 at 548.463 kb on - strand, within Echvi_0493 at 548.463 kb on - strand, within Echvi_0493 at 548.463 kb on - strand, within Echvi_0493 at 548.494 kb on + strand, within Echvi_0493 at 548.494 kb on + strand, within Echvi_0493 at 548.496 kb on + strand, within Echvi_0493 at 548.586 kb on + strand, within Echvi_0493 at 548.586 kb on + strand, within Echvi_0493 at 548.616 kb on + strand, within Echvi_0493 at 548.616 kb on + strand, within Echvi_0493 at 548.616 kb on + strand, within Echvi_0493 at 548.622 kb on - strand, within Echvi_0493 at 548.699 kb on + strand, within Echvi_0493 at 548.699 kb on + strand, within Echvi_0493 at 548.700 kb on - strand, within Echvi_0493 at 548.700 kb on - strand, within Echvi_0493 at 548.700 kb on - strand, within Echvi_0493 at 548.700 kb on - strand, within Echvi_0493 at 548.789 kb on + strand, within Echvi_0493 at 548.837 kb on - strand, within Echvi_0493 at 548.976 kb on + strand, within Echvi_0493 at 549.008 kb on + strand, within Echvi_0493 at 549.029 kb on + strand, within Echvi_0493 at 549.029 kb on + strand, within Echvi_0493 at 549.029 kb on + strand, within Echvi_0493 at 549.029 kb on + strand, within Echvi_0493 at 549.029 kb on + strand, within Echvi_0493 at 549.030 kb on - strand at 549.030 kb on - strand, within Echvi_0493 at 549.055 kb on + strand, within Echvi_0493 at 549.055 kb on + strand, within Echvi_0493 at 549.056 kb on - strand, within Echvi_0493 at 549.083 kb on + strand, within Echvi_0493 at 549.083 kb on + strand, within Echvi_0493 at 549.174 kb on - strand, within Echvi_0493 at 549.254 kb on + strand, within Echvi_0493 at 549.254 kb on + strand, within Echvi_0493 at 549.333 kb on + strand, within Echvi_0493 at 549.333 kb on + strand, within Echvi_0493 at 549.367 kb on - strand, within Echvi_0493 at 549.448 kb on + strand, within Echvi_0493 at 549.490 kb on + strand, within Echvi_0493 at 549.490 kb on + strand, within Echvi_0493 at 549.493 kb on + strand, within Echvi_0493 at 549.493 kb on + strand, within Echvi_0493 at 549.493 kb on + strand, within Echvi_0493 at 549.494 kb on - strand, within Echvi_0493 at 549.494 kb on - strand, within Echvi_0493 at 549.494 kb on - strand, within Echvi_0493 at 549.499 kb on + strand, within Echvi_0493 at 549.529 kb on - strand, within Echvi_0493 at 549.573 kb on + strand at 549.627 kb on + strand at 549.627 kb on + strand at 549.782 kb on - strand at 549.790 kb on + strand at 549.818 kb on - strand at 549.845 kb on + strand at 549.859 kb on + strand at 549.872 kb on + strand at 549.872 kb on + strand at 550.034 kb on - strand at 550.039 kb on + strand at 550.065 kb on - strand at 550.129 kb on + strand at 550.130 kb on - strand at 550.236 kb on - strand at 550.247 kb on + strand, within Echvi_0494 at 550.290 kb on - strand, within Echvi_0494 at 550.458 kb on + strand, within Echvi_0494 at 550.459 kb on - strand, within Echvi_0494 at 550.459 kb on - strand, within Echvi_0494 at 550.499 kb on + strand, within Echvi_0494 at 550.501 kb on + strand, within Echvi_0494 at 550.502 kb on - strand, within Echvi_0494 at 550.521 kb on - strand, within Echvi_0494 at 550.521 kb on - strand, within Echvi_0494 at 550.583 kb on - strand, within Echvi_0494 at 550.583 kb on - strand, within Echvi_0494 at 550.616 kb on + strand, within Echvi_0494 at 550.617 kb on - strand, within Echvi_0494 at 550.631 kb on - strand, within Echvi_0494 at 550.641 kb on - strand, within Echvi_0494 at 550.650 kb on - strand, within Echvi_0494 at 550.653 kb on + strand, within Echvi_0494 at 550.653 kb on + strand, within Echvi_0494 at 550.653 kb on + strand, within Echvi_0494 at 550.654 kb on - strand, within Echvi_0494 at 550.703 kb on + strand, within Echvi_0494 at 550.744 kb on + strand, within Echvi_0494 at 550.745 kb on - strand, within Echvi_0494 at 550.810 kb on + strand, within Echvi_0494
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 546,080 + Echvi_0492 0.54 -1.3 546,081 - Echvi_0492 0.55 +0.3 546,115 + Echvi_0492 0.57 -0.1 546,156 + Echvi_0492 0.59 -0.7 546,159 - Echvi_0492 0.59 -1.8 546,268 + Echvi_0492 0.66 -0.1 546,269 - Echvi_0492 0.66 +0.8 546,335 + Echvi_0492 0.70 -0.2 546,367 + Echvi_0492 0.71 -0.4 546,372 + Echvi_0492 0.72 -1.5 546,373 - Echvi_0492 0.72 -0.4 546,458 - Echvi_0492 0.77 -0.4 546,481 + Echvi_0492 0.78 +1.5 546,498 + Echvi_0492 0.79 +0.2 546,498 + Echvi_0492 0.79 -0.1 546,499 - Echvi_0492 0.79 -1.3 546,499 - Echvi_0492 0.79 -1.3 546,510 - Echvi_0492 0.80 -0.3 546,514 + Echvi_0492 0.80 -0.5 546,514 + Echvi_0492 0.80 +0.2 546,549 + Echvi_0492 0.82 -0.1 546,655 + Echvi_0492 0.89 +0.3 546,670 - Echvi_0492 0.89 +0.0 546,675 + Echvi_0492 0.90 -1.1 546,676 - Echvi_0492 0.90 +0.7 546,676 - Echvi_0492 0.90 -0.1 546,747 - -0.3 546,796 + +0.1 546,797 - -0.2 546,816 - +0.5 546,821 + -0.4 546,839 + +0.6 546,839 + -0.5 546,839 + +0.7 546,841 + +0.0 546,841 + -1.3 546,863 + -2.5 546,871 + +0.8 546,876 + +1.2 546,908 + -0.1 546,908 + -0.2 546,908 + -1.1 546,908 + +0.8 546,912 + -0.5 547,031 + -0.6 547,031 + -1.7 547,032 - +0.8 547,032 - +0.3 547,061 + +0.0 547,091 + -1.3 547,091 + -0.7 547,095 + -1.3 547,095 + +2.5 547,095 + +0.1 547,096 - +0.7 547,096 - -0.6 547,096 - +0.5 547,097 + -1.2 547,097 + +1.5 547,098 - -2.1 547,098 - +1.4 547,098 - -2.9 547,133 + -0.6 547,133 + -1.0 547,134 - -0.3 547,134 - -2.0 547,187 + Echvi_0493 0.11 -0.9 547,187 + Echvi_0493 0.11 -0.1 547,188 - Echvi_0493 0.11 +0.2 547,464 + Echvi_0493 0.20 -1.6 547,465 - Echvi_0493 0.20 +0.3 547,465 - Echvi_0493 0.20 -3.1 547,509 + Echvi_0493 0.22 -0.3 547,528 - Echvi_0493 0.22 +1.1 547,528 - Echvi_0493 0.22 -0.4 547,559 - Echvi_0493 0.23 -1.0 547,569 + Echvi_0493 0.24 -0.4 547,569 + Echvi_0493 0.24 +0.7 547,571 + Echvi_0493 0.24 +1.5 547,572 - Echvi_0493 0.24 -0.4 547,691 + Echvi_0493 0.28 -1.0 547,692 - Echvi_0493 0.28 -0.8 547,692 - Echvi_0493 0.28 -1.6 547,708 + Echvi_0493 0.28 -0.2 547,728 + Echvi_0493 0.29 -2.1 547,728 + Echvi_0493 0.29 +0.1 547,729 - Echvi_0493 0.29 -0.2 547,747 - Echvi_0493 0.30 -1.3 547,748 + Echvi_0493 0.30 +0.3 547,773 + Echvi_0493 0.31 +0.6 547,856 + Echvi_0493 0.33 +1.1 547,856 + Echvi_0493 0.33 -0.9 547,857 - Echvi_0493 0.34 -0.2 547,903 - Echvi_0493 0.35 +2.4 547,933 + Echvi_0493 0.36 -1.3 547,935 + Echvi_0493 0.36 +1.7 547,935 + Echvi_0493 0.36 -2.6 547,936 - Echvi_0493 0.36 +1.0 547,936 - Echvi_0493 0.36 -1.2 547,975 + Echvi_0493 0.37 +1.1 548,061 + Echvi_0493 0.40 -0.1 548,062 - Echvi_0493 0.40 -0.8 548,121 - Echvi_0493 0.42 -1.2 548,133 - Echvi_0493 0.43 +0.1 548,138 + Echvi_0493 0.43 +0.3 548,138 + Echvi_0493 0.43 +0.7 548,138 + Echvi_0493 0.43 -1.8 548,138 + Echvi_0493 0.43 -0.2 548,138 + Echvi_0493 0.43 +0.6 548,139 - Echvi_0493 0.43 -0.9 548,139 - Echvi_0493 0.43 -0.9 548,171 + Echvi_0493 0.44 -0.2 548,175 + Echvi_0493 0.44 -0.0 548,176 - Echvi_0493 0.44 +0.2 548,205 + Echvi_0493 0.45 -0.6 548,241 + Echvi_0493 0.46 +0.0 548,389 + Echvi_0493 0.51 +2.7 548,389 + Echvi_0493 0.51 +0.2 548,389 + Echvi_0493 0.51 +0.1 548,389 + Echvi_0493 0.51 +0.2 548,390 - Echvi_0493 0.51 -1.2 548,415 - Echvi_0493 0.52 +0.0 548,424 + Echvi_0493 0.53 -0.4 548,425 - Echvi_0493 0.53 -0.7 548,430 + Echvi_0493 0.53 -1.3 548,430 + Echvi_0493 0.53 -0.3 548,430 + Echvi_0493 0.53 -0.6 548,430 + Echvi_0493 0.53 -0.2 548,431 - Echvi_0493 0.53 -0.3 548,462 + Echvi_0493 0.54 +0.4 548,462 + Echvi_0493 0.54 -0.1 548,462 + Echvi_0493 0.54 +0.8 548,462 + Echvi_0493 0.54 -1.1 548,462 + Echvi_0493 0.54 +0.1 548,462 + Echvi_0493 0.54 -1.0 548,462 + Echvi_0493 0.54 -1.3 548,462 + Echvi_0493 0.54 -0.8 548,462 + Echvi_0493 0.54 -1.9 548,462 + Echvi_0493 0.54 +1.1 548,462 + Echvi_0493 0.54 -2.1 548,462 + Echvi_0493 0.54 +1.1 548,462 + Echvi_0493 0.54 +1.0 548,462 + Echvi_0493 0.54 +0.4 548,463 - Echvi_0493 0.54 +0.4 548,463 - Echvi_0493 0.54 -0.7 548,463 - Echvi_0493 0.54 +1.6 548,463 - Echvi_0493 0.54 -0.9 548,463 - Echvi_0493 0.54 +0.2 548,463 - Echvi_0493 0.54 -2.5 548,463 - Echvi_0493 0.54 +0.2 548,463 - Echvi_0493 0.54 -0.4 548,463 - Echvi_0493 0.54 -0.5 548,494 + Echvi_0493 0.55 -0.9 548,494 + Echvi_0493 0.55 -0.9 548,496 + Echvi_0493 0.55 -0.2 548,586 + Echvi_0493 0.58 -0.2 548,586 + Echvi_0493 0.58 -0.4 548,616 + Echvi_0493 0.59 +0.9 548,616 + Echvi_0493 0.59 -1.0 548,616 + Echvi_0493 0.59 +0.2 548,622 - Echvi_0493 0.59 -0.0 548,699 + Echvi_0493 0.62 -0.7 548,699 + Echvi_0493 0.62 +3.1 548,700 - Echvi_0493 0.62 +0.2 548,700 - Echvi_0493 0.62 -0.0 548,700 - Echvi_0493 0.62 -0.5 548,700 - Echvi_0493 0.62 -0.7 548,789 + Echvi_0493 0.65 -0.2 548,837 - Echvi_0493 0.66 +1.7 548,976 + Echvi_0493 0.71 -1.9 549,008 + Echvi_0493 0.72 +0.2 549,029 + Echvi_0493 0.73 +0.5 549,029 + Echvi_0493 0.73 +1.6 549,029 + Echvi_0493 0.73 +0.5 549,029 + Echvi_0493 0.73 -1.7 549,029 + Echvi_0493 0.73 -0.1 549,030 - +2.7 549,030 - Echvi_0493 0.73 -0.2 549,055 + Echvi_0493 0.74 +0.1 549,055 + Echvi_0493 0.74 -1.5 549,056 - Echvi_0493 0.74 -1.3 549,083 + Echvi_0493 0.75 -2.3 549,083 + Echvi_0493 0.75 -0.9 549,174 - Echvi_0493 0.78 +0.2 549,254 + Echvi_0493 0.81 -0.9 549,254 + Echvi_0493 0.81 -0.3 549,333 + Echvi_0493 0.83 +0.8 549,333 + Echvi_0493 0.83 +0.1 549,367 - Echvi_0493 0.84 +0.5 549,448 + Echvi_0493 0.87 -1.1 549,490 + Echvi_0493 0.88 +0.2 549,490 + Echvi_0493 0.88 +0.6 549,493 + Echvi_0493 0.89 -1.5 549,493 + Echvi_0493 0.89 +0.8 549,493 + Echvi_0493 0.89 -1.0 549,494 - Echvi_0493 0.89 +0.4 549,494 - Echvi_0493 0.89 -1.2 549,494 - Echvi_0493 0.89 +0.1 549,499 + Echvi_0493 0.89 -1.2 549,529 - Echvi_0493 0.90 -0.6 549,573 + -1.1 549,627 + +0.8 549,627 + -0.4 549,782 - -0.2 549,790 + +0.1 549,818 - -0.7 549,845 + +0.3 549,859 + +0.5 549,872 + +0.6 549,872 + +0.1 550,034 - -0.3 550,039 + -2.1 550,065 - -1.5 550,129 + -0.1 550,130 - +0.3 550,236 - -0.6 550,247 + Echvi_0494 0.14 -0.3 550,290 - Echvi_0494 0.18 -0.7 550,458 + Echvi_0494 0.33 +0.1 550,459 - Echvi_0494 0.33 -1.0 550,459 - Echvi_0494 0.33 -0.4 550,499 + Echvi_0494 0.36 +0.7 550,501 + Echvi_0494 0.36 +0.6 550,502 - Echvi_0494 0.37 -1.0 550,521 - Echvi_0494 0.38 +0.9 550,521 - Echvi_0494 0.38 -0.7 550,583 - Echvi_0494 0.44 +0.0 550,583 - Echvi_0494 0.44 -0.6 550,616 + Echvi_0494 0.46 +0.3 550,617 - Echvi_0494 0.47 -1.1 550,631 - Echvi_0494 0.48 +0.7 550,641 - Echvi_0494 0.49 -2.8 550,650 - Echvi_0494 0.49 +0.3 550,653 + Echvi_0494 0.50 -0.3 550,653 + Echvi_0494 0.50 +0.6 550,653 + Echvi_0494 0.50 -0.5 550,654 - Echvi_0494 0.50 +1.1 550,703 + Echvi_0494 0.54 -2.1 550,744 + Echvi_0494 0.58 -0.1 550,745 - Echvi_0494 0.58 -0.5 550,810 + Echvi_0494 0.63 +0.1
Or see this region's nucleotide sequence