Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0488

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0487 and Echvi_0488 are separated by 250 nucleotidesEchvi_0488 and Echvi_0489 are separated by 225 nucleotides Echvi_0487: Echvi_0487 - Highly conserved protein containing a thioredoxin domain, at 538,824 to 540,038 _0487 Echvi_0488: Echvi_0488 - hypothetical protein, at 540,289 to 541,599 _0488 Echvi_0489: Echvi_0489 - Uncharacterized protein conserved in bacteria, at 541,825 to 543,066 _0489 Position (kb) 540 541 542Strain fitness (log2 ratio) -2 -1 0 1 2at 539.338 kb on + strand, within Echvi_0487at 539.353 kb on + strand, within Echvi_0487at 539.354 kb on - strand, within Echvi_0487at 539.354 kb on - strand, within Echvi_0487at 539.419 kb on + strand, within Echvi_0487at 539.419 kb on + strand, within Echvi_0487at 539.419 kb on + strand, within Echvi_0487at 539.420 kb on - strand, within Echvi_0487at 539.477 kb on + strand, within Echvi_0487at 539.477 kb on + strand, within Echvi_0487at 539.477 kb on + strand, within Echvi_0487at 539.593 kb on + strand, within Echvi_0487at 539.633 kb on + strand, within Echvi_0487at 539.638 kb on + strand, within Echvi_0487at 539.638 kb on + strand, within Echvi_0487at 539.638 kb on + strand, within Echvi_0487at 539.639 kb on - strand, within Echvi_0487at 539.639 kb on - strand, within Echvi_0487at 539.645 kb on + strand, within Echvi_0487at 539.740 kb on + strand, within Echvi_0487at 539.830 kb on + strand, within Echvi_0487at 539.830 kb on + strand, within Echvi_0487at 539.830 kb on + strand, within Echvi_0487at 539.831 kb on - strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.871 kb on - strand, within Echvi_0487at 539.872 kb on + strand, within Echvi_0487at 539.873 kb on - strand, within Echvi_0487at 539.873 kb on - strand, within Echvi_0487at 539.873 kb on - strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.878 kb on + strand, within Echvi_0487at 539.878 kb on + strand, within Echvi_0487at 539.879 kb on - strand, within Echvi_0487at 539.903 kb on + strand, within Echvi_0487at 539.919 kb on - strandat 540.050 kb on + strandat 540.053 kb on + strandat 540.054 kb on - strandat 540.054 kb on - strandat 540.065 kb on + strandat 540.070 kb on - strandat 540.140 kb on + strandat 540.140 kb on + strandat 540.140 kb on + strandat 540.186 kb on - strandat 540.189 kb on + strandat 540.195 kb on + strandat 540.269 kb on + strandat 540.269 kb on + strandat 540.270 kb on - strandat 540.273 kb on + strandat 540.273 kb on + strandat 540.274 kb on - strandat 540.274 kb on - strandat 540.280 kb on + strandat 540.280 kb on + strandat 540.283 kb on + strandat 540.283 kb on + strandat 540.284 kb on - strandat 540.290 kb on + strandat 540.295 kb on + strandat 540.401 kb on - strandat 540.408 kb on + strandat 540.409 kb on - strandat 540.413 kb on + strandat 540.489 kb on + strand, within Echvi_0488at 540.489 kb on + strand, within Echvi_0488at 540.489 kb on + strand, within Echvi_0488at 540.492 kb on - strand, within Echvi_0488at 540.508 kb on - strand, within Echvi_0488at 540.534 kb on + strand, within Echvi_0488at 540.540 kb on - strand, within Echvi_0488at 540.622 kb on + strand, within Echvi_0488at 540.693 kb on - strand, within Echvi_0488at 540.719 kb on + strand, within Echvi_0488at 540.723 kb on + strand, within Echvi_0488at 540.723 kb on + strand, within Echvi_0488at 540.723 kb on + strand, within Echvi_0488at 540.723 kb on + strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.731 kb on + strand, within Echvi_0488at 540.731 kb on + strand, within Echvi_0488at 540.732 kb on - strand, within Echvi_0488at 540.806 kb on + strand, within Echvi_0488at 540.806 kb on + strand, within Echvi_0488at 540.839 kb on + strand, within Echvi_0488at 540.924 kb on - strand, within Echvi_0488at 540.924 kb on - strand, within Echvi_0488at 540.924 kb on - strand, within Echvi_0488at 540.971 kb on - strand, within Echvi_0488at 540.986 kb on + strand, within Echvi_0488at 541.058 kb on + strand, within Echvi_0488at 541.219 kb on - strand, within Echvi_0488at 541.406 kb on + strand, within Echvi_0488at 541.406 kb on + strand, within Echvi_0488at 541.407 kb on - strand, within Echvi_0488at 541.407 kb on - strand, within Echvi_0488at 541.407 kb on - strand, within Echvi_0488at 541.410 kb on - strand, within Echvi_0488at 541.410 kb on - strand, within Echvi_0488at 541.410 kb on - strand, within Echvi_0488at 541.431 kb on + strand, within Echvi_0488at 541.479 kb on + strandat 541.480 kb on - strandat 541.599 kb on + strandat 541.600 kb on - strandat 541.600 kb on - strandat 541.603 kb on - strandat 541.607 kb on + strandat 541.607 kb on + strandat 541.607 kb on + strandat 541.607 kb on + strandat 541.607 kb on + strandat 541.608 kb on - strandat 541.626 kb on - strandat 541.656 kb on - strandat 541.687 kb on + strandat 541.696 kb on + strandat 541.696 kb on + strandat 541.839 kb on + strandat 541.930 kb on + strandat 541.979 kb on + strand, within Echvi_0489at 541.979 kb on + strand, within Echvi_0489at 541.979 kb on + strand, within Echvi_0489at 541.979 kb on + strand, within Echvi_0489at 541.980 kb on - strand, within Echvi_0489at 541.980 kb on - strand, within Echvi_0489at 542.111 kb on - strand, within Echvi_0489at 542.205 kb on + strand, within Echvi_0489at 542.206 kb on - strand, within Echvi_0489at 542.243 kb on + strand, within Echvi_0489at 542.357 kb on + strand, within Echvi_0489at 542.387 kb on + strand, within Echvi_0489at 542.388 kb on - strand, within Echvi_0489at 542.449 kb on - strand, within Echvi_0489at 542.486 kb on - strand, within Echvi_0489

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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539,338 + Echvi_0487 0.42 +0.3
539,353 + Echvi_0487 0.44 +0.1
539,354 - Echvi_0487 0.44 +0.7
539,354 - Echvi_0487 0.44 +0.2
539,419 + Echvi_0487 0.49 -1.6
539,419 + Echvi_0487 0.49 -1.2
539,419 + Echvi_0487 0.49 -0.1
539,420 - Echvi_0487 0.49 -0.5
539,477 + Echvi_0487 0.54 -0.6
539,477 + Echvi_0487 0.54 +0.8
539,477 + Echvi_0487 0.54 -0.9
539,593 + Echvi_0487 0.63 -0.2
539,633 + Echvi_0487 0.67 -2.1
539,638 + Echvi_0487 0.67 -0.1
539,638 + Echvi_0487 0.67 -0.1
539,638 + Echvi_0487 0.67 +0.7
539,639 - Echvi_0487 0.67 +0.3
539,639 - Echvi_0487 0.67 +0.2
539,645 + Echvi_0487 0.68 +0.4
539,740 + Echvi_0487 0.75 -0.7
539,830 + Echvi_0487 0.83 -0.4
539,830 + Echvi_0487 0.83 -0.6
539,830 + Echvi_0487 0.83 -0.4
539,831 - Echvi_0487 0.83 +1.1
539,870 + Echvi_0487 0.86 -1.7
539,870 + Echvi_0487 0.86 +0.1
539,870 + Echvi_0487 0.86 -0.3
539,870 + Echvi_0487 0.86 -1.5
539,870 + Echvi_0487 0.86 -0.4
539,871 - Echvi_0487 0.86 -0.8
539,872 + Echvi_0487 0.86 -1.1
539,873 - Echvi_0487 0.86 -0.8
539,873 - Echvi_0487 0.86 -1.8
539,873 - Echvi_0487 0.86 +0.5
539,876 + Echvi_0487 0.87 +1.1
539,876 + Echvi_0487 0.87 +1.1
539,876 + Echvi_0487 0.87 -1.9
539,876 + Echvi_0487 0.87 -1.3
539,876 + Echvi_0487 0.87 -0.8
539,877 - Echvi_0487 0.87 +0.4
539,877 - Echvi_0487 0.87 -1.6
539,877 - Echvi_0487 0.87 +0.2
539,877 - Echvi_0487 0.87 -0.4
539,877 - Echvi_0487 0.87 -0.7
539,877 - Echvi_0487 0.87 +0.7
539,877 - Echvi_0487 0.87 +2.4
539,877 - Echvi_0487 0.87 -0.5
539,877 - Echvi_0487 0.87 -0.6
539,877 - Echvi_0487 0.87 +0.3
539,878 + Echvi_0487 0.87 +0.5
539,878 + Echvi_0487 0.87 -0.0
539,879 - Echvi_0487 0.87 +0.5
539,903 + Echvi_0487 0.89 -0.5
539,919 - +1.0
540,050 + +2.3
540,053 + -0.8
540,054 - -1.7
540,054 - -2.3
540,065 + -0.1
540,070 - +0.3
540,140 + -0.4
540,140 + +0.4
540,140 + -0.2
540,186 - -0.1
540,189 + -1.2
540,195 + -0.9
540,269 + +0.3
540,269 + -0.5
540,270 - +0.3
540,273 + -0.2
540,273 + -0.9
540,274 - +0.6
540,274 - -1.2
540,280 + +0.6
540,280 + -0.9
540,283 + -1.3
540,283 + -0.2
540,284 - -1.0
540,290 + +0.7
540,295 + -0.8
540,401 - -0.2
540,408 + +0.5
540,409 - -0.4
540,413 + -0.1
540,489 + Echvi_0488 0.15 -0.8
540,489 + Echvi_0488 0.15 -1.0
540,489 + Echvi_0488 0.15 -2.0
540,492 - Echvi_0488 0.15 -2.0
540,508 - Echvi_0488 0.17 +0.2
540,534 + Echvi_0488 0.19 -1.3
540,540 - Echvi_0488 0.19 -0.2
540,622 + Echvi_0488 0.25 -0.6
540,693 - Echvi_0488 0.31 -0.3
540,719 + Echvi_0488 0.33 +0.1
540,723 + Echvi_0488 0.33 -0.5
540,723 + Echvi_0488 0.33 +0.5
540,723 + Echvi_0488 0.33 +0.6
540,723 + Echvi_0488 0.33 +0.4
540,724 - Echvi_0488 0.33 +1.4
540,724 - Echvi_0488 0.33 +0.8
540,724 - Echvi_0488 0.33 +0.7
540,724 - Echvi_0488 0.33 -1.5
540,724 - Echvi_0488 0.33 +0.0
540,731 + Echvi_0488 0.34 -1.0
540,731 + Echvi_0488 0.34 +0.5
540,732 - Echvi_0488 0.34 -1.0
540,806 + Echvi_0488 0.39 +0.7
540,806 + Echvi_0488 0.39 +0.2
540,839 + Echvi_0488 0.42 -0.6
540,924 - Echvi_0488 0.48 -0.1
540,924 - Echvi_0488 0.48 -0.5
540,924 - Echvi_0488 0.48 -0.1
540,971 - Echvi_0488 0.52 -1.9
540,986 + Echvi_0488 0.53 -1.8
541,058 + Echvi_0488 0.59 -0.4
541,219 - Echvi_0488 0.71 -1.8
541,406 + Echvi_0488 0.85 -1.6
541,406 + Echvi_0488 0.85 -2.0
541,407 - Echvi_0488 0.85 -0.8
541,407 - Echvi_0488 0.85 +0.2
541,407 - Echvi_0488 0.85 -1.0
541,410 - Echvi_0488 0.86 +0.9
541,410 - Echvi_0488 0.86 -0.3
541,410 - Echvi_0488 0.86 -0.1
541,431 + Echvi_0488 0.87 -1.0
541,479 + -1.4
541,480 - +0.0
541,599 + +1.7
541,600 - +0.2
541,600 - -0.1
541,603 - -1.5
541,607 + -0.3
541,607 + -0.6
541,607 + +0.8
541,607 + +0.5
541,607 + +0.1
541,608 - -0.6
541,626 - +0.4
541,656 - +0.6
541,687 + -1.5
541,696 + +0.9
541,696 + -1.3
541,839 + -0.9
541,930 + -1.2
541,979 + Echvi_0489 0.12 +0.6
541,979 + Echvi_0489 0.12 -1.1
541,979 + Echvi_0489 0.12 +0.0
541,979 + Echvi_0489 0.12 +0.5
541,980 - Echvi_0489 0.12 -0.8
541,980 - Echvi_0489 0.12 +0.6
542,111 - Echvi_0489 0.23 +1.7
542,205 + Echvi_0489 0.31 +1.1
542,206 - Echvi_0489 0.31 -0.1
542,243 + Echvi_0489 0.34 +0.4
542,357 + Echvi_0489 0.43 +0.1
542,387 + Echvi_0489 0.45 +0.4
542,388 - Echvi_0489 0.45 +2.1
542,449 - Echvi_0489 0.50 +0.1
542,486 - Echvi_0489 0.53 +0.7

Or see this region's nucleotide sequence