Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0487

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0486 and Echvi_0487 are separated by 200 nucleotidesEchvi_0487 and Echvi_0488 are separated by 250 nucleotides Echvi_0486: Echvi_0486 - Beta-xylosidase, at 536,479 to 538,623 _0486 Echvi_0487: Echvi_0487 - Highly conserved protein containing a thioredoxin domain, at 538,824 to 540,038 _0487 Echvi_0488: Echvi_0488 - hypothetical protein, at 540,289 to 541,599 _0488 Position (kb) 538 539 540 541Strain fitness (log2 ratio) -2 -1 0 1 2 3at 537.825 kb on - strand, within Echvi_0486at 537.825 kb on - strand, within Echvi_0486at 537.825 kb on - strand, within Echvi_0486at 537.837 kb on - strand, within Echvi_0486at 537.837 kb on - strand, within Echvi_0486at 537.877 kb on + strand, within Echvi_0486at 537.920 kb on + strand, within Echvi_0486at 537.920 kb on + strand, within Echvi_0486at 537.920 kb on + strand, within Echvi_0486at 537.920 kb on + strand, within Echvi_0486at 537.996 kb on - strand, within Echvi_0486at 538.030 kb on - strand, within Echvi_0486at 538.103 kb on + strand, within Echvi_0486at 538.103 kb on + strand, within Echvi_0486at 538.109 kb on + strand, within Echvi_0486at 538.110 kb on - strand, within Echvi_0486at 538.113 kb on - strand, within Echvi_0486at 538.116 kb on + strand, within Echvi_0486at 538.151 kb on + strand, within Echvi_0486at 538.151 kb on + strand, within Echvi_0486at 538.161 kb on - strand, within Echvi_0486at 538.181 kb on + strand, within Echvi_0486at 538.181 kb on + strand, within Echvi_0486at 538.182 kb on - strand, within Echvi_0486at 538.185 kb on + strand, within Echvi_0486at 538.185 kb on + strand, within Echvi_0486at 538.185 kb on + strand, within Echvi_0486at 538.186 kb on - strand, within Echvi_0486at 538.249 kb on + strand, within Echvi_0486at 538.250 kb on - strand, within Echvi_0486at 538.346 kb on - strand, within Echvi_0486at 538.353 kb on - strand, within Echvi_0486at 538.393 kb on + strand, within Echvi_0486at 538.588 kb on - strandat 538.643 kb on - strandat 538.694 kb on + strandat 538.712 kb on + strandat 538.813 kb on + strandat 538.814 kb on - strandat 538.858 kb on + strandat 538.861 kb on + strandat 538.861 kb on + strandat 538.862 kb on - strandat 538.870 kb on + strandat 538.870 kb on + strandat 538.871 kb on - strandat 538.887 kb on + strandat 538.907 kb on + strandat 538.963 kb on + strand, within Echvi_0487at 538.964 kb on - strand, within Echvi_0487at 538.964 kb on - strand, within Echvi_0487at 538.964 kb on - strand, within Echvi_0487at 538.964 kb on - strand, within Echvi_0487at 538.964 kb on - strand, within Echvi_0487at 539.009 kb on - strand, within Echvi_0487at 539.012 kb on - strand, within Echvi_0487at 539.038 kb on + strand, within Echvi_0487at 539.141 kb on + strand, within Echvi_0487at 539.227 kb on + strand, within Echvi_0487at 539.237 kb on + strand, within Echvi_0487at 539.239 kb on + strand, within Echvi_0487at 539.245 kb on + strandat 539.245 kb on + strand, within Echvi_0487at 539.338 kb on + strand, within Echvi_0487at 539.353 kb on + strand, within Echvi_0487at 539.354 kb on - strand, within Echvi_0487at 539.354 kb on - strand, within Echvi_0487at 539.419 kb on + strand, within Echvi_0487at 539.419 kb on + strand, within Echvi_0487at 539.419 kb on + strand, within Echvi_0487at 539.420 kb on - strand, within Echvi_0487at 539.477 kb on + strand, within Echvi_0487at 539.477 kb on + strand, within Echvi_0487at 539.477 kb on + strand, within Echvi_0487at 539.593 kb on + strand, within Echvi_0487at 539.633 kb on + strand, within Echvi_0487at 539.638 kb on + strand, within Echvi_0487at 539.638 kb on + strand, within Echvi_0487at 539.638 kb on + strand, within Echvi_0487at 539.639 kb on - strand, within Echvi_0487at 539.639 kb on - strand, within Echvi_0487at 539.645 kb on + strand, within Echvi_0487at 539.740 kb on + strand, within Echvi_0487at 539.830 kb on + strand, within Echvi_0487at 539.830 kb on + strand, within Echvi_0487at 539.830 kb on + strand, within Echvi_0487at 539.831 kb on - strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.870 kb on + strand, within Echvi_0487at 539.871 kb on - strand, within Echvi_0487at 539.872 kb on + strand, within Echvi_0487at 539.873 kb on - strand, within Echvi_0487at 539.873 kb on - strand, within Echvi_0487at 539.873 kb on - strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.876 kb on + strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.877 kb on - strand, within Echvi_0487at 539.878 kb on + strand, within Echvi_0487at 539.878 kb on + strand, within Echvi_0487at 539.879 kb on - strand, within Echvi_0487at 539.903 kb on + strand, within Echvi_0487at 539.919 kb on - strandat 540.050 kb on + strandat 540.053 kb on + strandat 540.054 kb on - strandat 540.054 kb on - strandat 540.065 kb on + strandat 540.070 kb on - strandat 540.140 kb on + strandat 540.140 kb on + strandat 540.140 kb on + strandat 540.186 kb on - strandat 540.189 kb on + strandat 540.195 kb on + strandat 540.269 kb on + strandat 540.269 kb on + strandat 540.270 kb on - strandat 540.273 kb on + strandat 540.273 kb on + strandat 540.274 kb on - strandat 540.274 kb on - strandat 540.280 kb on + strandat 540.280 kb on + strandat 540.283 kb on + strandat 540.283 kb on + strandat 540.284 kb on - strandat 540.290 kb on + strandat 540.295 kb on + strandat 540.401 kb on - strandat 540.408 kb on + strandat 540.409 kb on - strandat 540.413 kb on + strandat 540.489 kb on + strand, within Echvi_0488at 540.489 kb on + strand, within Echvi_0488at 540.489 kb on + strand, within Echvi_0488at 540.492 kb on - strand, within Echvi_0488at 540.508 kb on - strand, within Echvi_0488at 540.534 kb on + strand, within Echvi_0488at 540.540 kb on - strand, within Echvi_0488at 540.622 kb on + strand, within Echvi_0488at 540.693 kb on - strand, within Echvi_0488at 540.719 kb on + strand, within Echvi_0488at 540.723 kb on + strand, within Echvi_0488at 540.723 kb on + strand, within Echvi_0488at 540.723 kb on + strand, within Echvi_0488at 540.723 kb on + strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.724 kb on - strand, within Echvi_0488at 540.731 kb on + strand, within Echvi_0488at 540.731 kb on + strand, within Echvi_0488at 540.732 kb on - strand, within Echvi_0488at 540.806 kb on + strand, within Echvi_0488at 540.806 kb on + strand, within Echvi_0488at 540.839 kb on + strand, within Echvi_0488at 540.924 kb on - strand, within Echvi_0488at 540.924 kb on - strand, within Echvi_0488at 540.924 kb on - strand, within Echvi_0488at 540.971 kb on - strand, within Echvi_0488at 540.986 kb on + strand, within Echvi_0488

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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537,825 - Echvi_0486 0.63 +0.4
537,825 - Echvi_0486 0.63 -0.3
537,825 - Echvi_0486 0.63 +0.3
537,837 - Echvi_0486 0.63 +0.6
537,837 - Echvi_0486 0.63 +0.1
537,877 + Echvi_0486 0.65 +1.0
537,920 + Echvi_0486 0.67 -0.1
537,920 + Echvi_0486 0.67 +0.5
537,920 + Echvi_0486 0.67 +0.1
537,920 + Echvi_0486 0.67 +0.8
537,996 - Echvi_0486 0.71 +1.0
538,030 - Echvi_0486 0.72 -0.4
538,103 + Echvi_0486 0.76 +0.9
538,103 + Echvi_0486 0.76 +0.2
538,109 + Echvi_0486 0.76 +1.1
538,110 - Echvi_0486 0.76 +0.3
538,113 - Echvi_0486 0.76 -0.1
538,116 + Echvi_0486 0.76 +1.2
538,151 + Echvi_0486 0.78 +0.2
538,151 + Echvi_0486 0.78 +0.5
538,161 - Echvi_0486 0.78 +0.9
538,181 + Echvi_0486 0.79 +1.5
538,181 + Echvi_0486 0.79 +0.7
538,182 - Echvi_0486 0.79 +1.2
538,185 + Echvi_0486 0.80 -1.1
538,185 + Echvi_0486 0.80 +0.1
538,185 + Echvi_0486 0.80 -1.7
538,186 - Echvi_0486 0.80 -1.2
538,249 + Echvi_0486 0.83 +0.0
538,250 - Echvi_0486 0.83 +1.1
538,346 - Echvi_0486 0.87 +0.0
538,353 - Echvi_0486 0.87 +0.1
538,393 + Echvi_0486 0.89 -1.2
538,588 - -0.0
538,643 - +0.7
538,694 + -0.1
538,712 + +0.0
538,813 + +0.0
538,814 - -0.3
538,858 + -0.1
538,861 + +0.7
538,861 + -1.2
538,862 - +0.0
538,870 + -0.1
538,870 + +0.2
538,871 - -1.5
538,887 + +0.3
538,907 + -2.0
538,963 + Echvi_0487 0.11 -0.8
538,964 - Echvi_0487 0.12 -0.3
538,964 - Echvi_0487 0.12 +1.2
538,964 - Echvi_0487 0.12 -1.7
538,964 - Echvi_0487 0.12 +0.4
538,964 - Echvi_0487 0.12 +2.3
539,009 - Echvi_0487 0.15 -1.9
539,012 - Echvi_0487 0.15 -2.1
539,038 + Echvi_0487 0.18 -1.3
539,141 + Echvi_0487 0.26 +0.7
539,227 + Echvi_0487 0.33 -0.7
539,237 + Echvi_0487 0.34 -0.3
539,239 + Echvi_0487 0.34 +0.6
539,245 + +3.3
539,245 + Echvi_0487 0.35 -1.3
539,338 + Echvi_0487 0.42 +0.3
539,353 + Echvi_0487 0.44 +0.1
539,354 - Echvi_0487 0.44 +0.7
539,354 - Echvi_0487 0.44 +0.2
539,419 + Echvi_0487 0.49 -1.6
539,419 + Echvi_0487 0.49 -1.2
539,419 + Echvi_0487 0.49 -0.1
539,420 - Echvi_0487 0.49 -0.5
539,477 + Echvi_0487 0.54 -0.6
539,477 + Echvi_0487 0.54 +0.8
539,477 + Echvi_0487 0.54 -0.9
539,593 + Echvi_0487 0.63 -0.2
539,633 + Echvi_0487 0.67 -2.1
539,638 + Echvi_0487 0.67 -0.1
539,638 + Echvi_0487 0.67 -0.1
539,638 + Echvi_0487 0.67 +0.7
539,639 - Echvi_0487 0.67 +0.3
539,639 - Echvi_0487 0.67 +0.2
539,645 + Echvi_0487 0.68 +0.4
539,740 + Echvi_0487 0.75 -0.7
539,830 + Echvi_0487 0.83 -0.4
539,830 + Echvi_0487 0.83 -0.6
539,830 + Echvi_0487 0.83 -0.4
539,831 - Echvi_0487 0.83 +1.1
539,870 + Echvi_0487 0.86 -1.7
539,870 + Echvi_0487 0.86 +0.1
539,870 + Echvi_0487 0.86 -0.3
539,870 + Echvi_0487 0.86 -1.5
539,870 + Echvi_0487 0.86 -0.4
539,871 - Echvi_0487 0.86 -0.8
539,872 + Echvi_0487 0.86 -1.1
539,873 - Echvi_0487 0.86 -0.8
539,873 - Echvi_0487 0.86 -1.8
539,873 - Echvi_0487 0.86 +0.5
539,876 + Echvi_0487 0.87 +1.1
539,876 + Echvi_0487 0.87 +1.1
539,876 + Echvi_0487 0.87 -1.9
539,876 + Echvi_0487 0.87 -1.3
539,876 + Echvi_0487 0.87 -0.8
539,877 - Echvi_0487 0.87 +0.4
539,877 - Echvi_0487 0.87 -1.6
539,877 - Echvi_0487 0.87 +0.2
539,877 - Echvi_0487 0.87 -0.4
539,877 - Echvi_0487 0.87 -0.7
539,877 - Echvi_0487 0.87 +0.7
539,877 - Echvi_0487 0.87 +2.4
539,877 - Echvi_0487 0.87 -0.5
539,877 - Echvi_0487 0.87 -0.6
539,877 - Echvi_0487 0.87 +0.3
539,878 + Echvi_0487 0.87 +0.5
539,878 + Echvi_0487 0.87 -0.0
539,879 - Echvi_0487 0.87 +0.5
539,903 + Echvi_0487 0.89 -0.5
539,919 - +1.0
540,050 + +2.3
540,053 + -0.8
540,054 - -1.7
540,054 - -2.3
540,065 + -0.1
540,070 - +0.3
540,140 + -0.4
540,140 + +0.4
540,140 + -0.2
540,186 - -0.1
540,189 + -1.2
540,195 + -0.9
540,269 + +0.3
540,269 + -0.5
540,270 - +0.3
540,273 + -0.2
540,273 + -0.9
540,274 - +0.6
540,274 - -1.2
540,280 + +0.6
540,280 + -0.9
540,283 + -1.3
540,283 + -0.2
540,284 - -1.0
540,290 + +0.7
540,295 + -0.8
540,401 - -0.2
540,408 + +0.5
540,409 - -0.4
540,413 + -0.1
540,489 + Echvi_0488 0.15 -0.8
540,489 + Echvi_0488 0.15 -1.0
540,489 + Echvi_0488 0.15 -2.0
540,492 - Echvi_0488 0.15 -2.0
540,508 - Echvi_0488 0.17 +0.2
540,534 + Echvi_0488 0.19 -1.3
540,540 - Echvi_0488 0.19 -0.2
540,622 + Echvi_0488 0.25 -0.6
540,693 - Echvi_0488 0.31 -0.3
540,719 + Echvi_0488 0.33 +0.1
540,723 + Echvi_0488 0.33 -0.5
540,723 + Echvi_0488 0.33 +0.5
540,723 + Echvi_0488 0.33 +0.6
540,723 + Echvi_0488 0.33 +0.4
540,724 - Echvi_0488 0.33 +1.4
540,724 - Echvi_0488 0.33 +0.8
540,724 - Echvi_0488 0.33 +0.7
540,724 - Echvi_0488 0.33 -1.5
540,724 - Echvi_0488 0.33 +0.0
540,731 + Echvi_0488 0.34 -1.0
540,731 + Echvi_0488 0.34 +0.5
540,732 - Echvi_0488 0.34 -1.0
540,806 + Echvi_0488 0.39 +0.7
540,806 + Echvi_0488 0.39 +0.2
540,839 + Echvi_0488 0.42 -0.6
540,924 - Echvi_0488 0.48 -0.1
540,924 - Echvi_0488 0.48 -0.5
540,924 - Echvi_0488 0.48 -0.1
540,971 - Echvi_0488 0.52 -1.9
540,986 + Echvi_0488 0.53 -1.8

Or see this region's nucleotide sequence