Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0467

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0465 and Echvi_0466 overlap by 17 nucleotidesEchvi_0466 and Echvi_0467 are separated by 112 nucleotidesEchvi_0467 and Echvi_0468 are separated by 478 nucleotides Echvi_0465: Echvi_0465 - hypothetical protein, at 509,909 to 511,240 _0465 Echvi_0466: Echvi_0466 - hypothetical protein, at 511,224 to 511,928 _0466 Echvi_0467: Echvi_0467 - hypothetical protein, at 512,041 to 512,457 _0467 Echvi_0468: Echvi_0468 - SusD family., at 512,936 to 514,681 _0468 Position (kb) 512 513Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 511.084 kb on - strand, within Echvi_0465at 511.086 kb on - strand, within Echvi_0465at 511.086 kb on - strand, within Echvi_0465at 511.112 kb on - strandat 511.112 kb on - strandat 511.112 kb on - strandat 511.146 kb on - strandat 511.146 kb on - strandat 511.161 kb on - strandat 511.161 kb on - strandat 511.176 kb on - strandat 511.176 kb on - strandat 511.199 kb on - strandat 511.295 kb on + strand, within Echvi_0466at 511.310 kb on + strand, within Echvi_0466at 511.311 kb on - strand, within Echvi_0466at 511.311 kb on - strand, within Echvi_0466at 511.311 kb on - strand, within Echvi_0466at 511.349 kb on + strand, within Echvi_0466at 511.350 kb on - strand, within Echvi_0466at 511.354 kb on + strand, within Echvi_0466at 511.354 kb on + strand, within Echvi_0466at 511.354 kb on + strand, within Echvi_0466at 511.355 kb on - strand, within Echvi_0466at 511.355 kb on - strand, within Echvi_0466at 511.358 kb on - strand, within Echvi_0466at 511.358 kb on - strand, within Echvi_0466at 511.358 kb on - strand, within Echvi_0466at 511.361 kb on - strand, within Echvi_0466at 511.407 kb on - strand, within Echvi_0466at 511.412 kb on - strand, within Echvi_0466at 511.447 kb on - strand, within Echvi_0466at 511.447 kb on - strand, within Echvi_0466at 511.451 kb on + strand, within Echvi_0466at 511.451 kb on + strand, within Echvi_0466at 511.451 kb on + strand, within Echvi_0466at 511.452 kb on - strand, within Echvi_0466at 511.465 kb on + strand, within Echvi_0466at 511.511 kb on - strand, within Echvi_0466at 511.511 kb on - strand, within Echvi_0466at 511.553 kb on + strand, within Echvi_0466at 511.554 kb on - strand, within Echvi_0466at 511.677 kb on + strand, within Echvi_0466at 511.677 kb on + strand, within Echvi_0466at 511.677 kb on + strand, within Echvi_0466at 511.677 kb on + strand, within Echvi_0466at 511.678 kb on - strand, within Echvi_0466at 511.723 kb on - strand, within Echvi_0466at 511.723 kb on - strand, within Echvi_0466at 511.723 kb on - strand, within Echvi_0466at 511.747 kb on + strand, within Echvi_0466at 511.797 kb on - strand, within Echvi_0466at 511.803 kb on - strand, within Echvi_0466at 511.803 kb on - strand, within Echvi_0466at 511.913 kb on - strandat 511.913 kb on - strandat 511.926 kb on + strandat 511.927 kb on - strandat 511.927 kb on - strandat 511.940 kb on + strandat 511.940 kb on + strandat 511.983 kb on + strandat 511.983 kb on + strandat 511.983 kb on + strandat 511.983 kb on + strandat 511.983 kb on + strandat 511.983 kb on + strandat 511.983 kb on + strandat 511.984 kb on - strandat 511.984 kb on - strandat 511.984 kb on - strandat 511.984 kb on - strandat 511.984 kb on - strandat 511.984 kb on - strandat 511.987 kb on + strandat 511.991 kb on + strandat 511.991 kb on + strandat 511.991 kb on + strandat 512.011 kb on + strandat 512.038 kb on + strandat 512.070 kb on + strandat 512.079 kb on + strandat 512.089 kb on - strand, within Echvi_0467at 512.124 kb on + strand, within Echvi_0467at 512.179 kb on - strand, within Echvi_0467at 512.179 kb on - strand, within Echvi_0467at 512.182 kb on - strand, within Echvi_0467at 512.182 kb on - strand, within Echvi_0467at 512.249 kb on + strand, within Echvi_0467at 512.256 kb on + strand, within Echvi_0467at 512.257 kb on - strand, within Echvi_0467at 512.260 kb on + strand, within Echvi_0467at 512.260 kb on + strand, within Echvi_0467at 512.260 kb on + strand, within Echvi_0467at 512.260 kb on + strand, within Echvi_0467at 512.260 kb on + strand, within Echvi_0467at 512.260 kb on + strand, within Echvi_0467at 512.260 kb on + strand, within Echvi_0467at 512.261 kb on - strand, within Echvi_0467at 512.261 kb on - strand, within Echvi_0467at 512.261 kb on - strand, within Echvi_0467at 512.261 kb on - strand, within Echvi_0467at 512.261 kb on - strand, within Echvi_0467at 512.262 kb on + strand, within Echvi_0467at 512.262 kb on + strand, within Echvi_0467at 512.278 kb on + strand, within Echvi_0467at 512.278 kb on + strand, within Echvi_0467at 512.280 kb on + strand, within Echvi_0467at 512.280 kb on + strand, within Echvi_0467at 512.280 kb on + strand, within Echvi_0467at 512.281 kb on - strand, within Echvi_0467at 512.281 kb on - strand, within Echvi_0467at 512.281 kb on - strand, within Echvi_0467at 512.345 kb on - strand, within Echvi_0467at 512.345 kb on - strand, within Echvi_0467at 512.349 kb on - strand, within Echvi_0467at 512.378 kb on + strand, within Echvi_0467at 512.382 kb on + strand, within Echvi_0467at 512.459 kb on + strandat 512.460 kb on - strandat 512.490 kb on - strandat 512.502 kb on + strandat 512.502 kb on + strandat 512.503 kb on - strandat 512.528 kb on + strandat 512.679 kb on + strandat 512.694 kb on + strandat 512.708 kb on - strandat 512.727 kb on + strandat 512.727 kb on + strandat 512.728 kb on - strandat 512.738 kb on + strandat 512.738 kb on + strandat 512.742 kb on + strandat 512.742 kb on + strandat 512.742 kb on + strandat 512.743 kb on - strandat 512.751 kb on + strandat 512.752 kb on - strandat 512.754 kb on - strandat 512.772 kb on - strandat 512.777 kb on - strandat 512.780 kb on + strandat 512.780 kb on + strandat 512.781 kb on - strandat 512.911 kb on - strandat 513.023 kb on + strandat 513.024 kb on - strandat 513.060 kb on + strandat 513.061 kb on - strandat 513.061 kb on - strandat 513.082 kb on - strandat 513.206 kb on - strand, within Echvi_0468at 513.270 kb on + strand, within Echvi_0468at 513.307 kb on + strand, within Echvi_0468at 513.312 kb on + strand, within Echvi_0468at 513.312 kb on + strand, within Echvi_0468at 513.312 kb on + strand, within Echvi_0468at 513.312 kb on + strand, within Echvi_0468at 513.313 kb on - strand, within Echvi_0468at 513.313 kb on - strand, within Echvi_0468at 513.316 kb on - strand, within Echvi_0468at 513.412 kb on + strand, within Echvi_0468at 513.412 kb on + strand, within Echvi_0468at 513.423 kb on + strand, within Echvi_0468at 513.451 kb on + strand, within Echvi_0468

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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511,084 - Echvi_0465 0.88 -0.9
511,086 - Echvi_0465 0.88 -0.6
511,086 - Echvi_0465 0.88 -0.6
511,112 - -1.5
511,112 - +0.9
511,112 - -1.5
511,146 - -0.1
511,146 - -0.5
511,161 - +0.0
511,161 - +1.5
511,176 - -0.4
511,176 - -0.6
511,199 - -2.0
511,295 + Echvi_0466 0.10 +0.3
511,310 + Echvi_0466 0.12 +0.4
511,311 - Echvi_0466 0.12 -2.1
511,311 - Echvi_0466 0.12 -0.3
511,311 - Echvi_0466 0.12 -2.2
511,349 + Echvi_0466 0.18 -0.1
511,350 - Echvi_0466 0.18 +1.1
511,354 + Echvi_0466 0.18 +0.6
511,354 + Echvi_0466 0.18 -1.4
511,354 + Echvi_0466 0.18 -0.4
511,355 - Echvi_0466 0.19 +0.3
511,355 - Echvi_0466 0.19 -0.3
511,358 - Echvi_0466 0.19 -0.1
511,358 - Echvi_0466 0.19 -1.3
511,358 - Echvi_0466 0.19 -0.5
511,361 - Echvi_0466 0.19 -0.1
511,407 - Echvi_0466 0.26 +1.7
511,412 - Echvi_0466 0.27 +0.9
511,447 - Echvi_0466 0.32 -0.6
511,447 - Echvi_0466 0.32 -1.0
511,451 + Echvi_0466 0.32 -0.5
511,451 + Echvi_0466 0.32 +0.7
511,451 + Echvi_0466 0.32 -1.0
511,452 - Echvi_0466 0.32 -0.7
511,465 + Echvi_0466 0.34 +0.6
511,511 - Echvi_0466 0.41 -0.5
511,511 - Echvi_0466 0.41 -0.3
511,553 + Echvi_0466 0.47 +0.6
511,554 - Echvi_0466 0.47 +1.0
511,677 + Echvi_0466 0.64 -0.3
511,677 + Echvi_0466 0.64 -0.8
511,677 + Echvi_0466 0.64 -0.7
511,677 + Echvi_0466 0.64 -1.1
511,678 - Echvi_0466 0.64 +0.1
511,723 - Echvi_0466 0.71 +0.7
511,723 - Echvi_0466 0.71 -1.4
511,723 - Echvi_0466 0.71 +1.4
511,747 + Echvi_0466 0.74 +2.0
511,797 - Echvi_0466 0.81 +2.0
511,803 - Echvi_0466 0.82 +0.7
511,803 - Echvi_0466 0.82 -0.1
511,913 - -0.9
511,913 - +0.7
511,926 + +0.9
511,927 - -0.2
511,927 - -1.0
511,940 + -0.1
511,940 + +0.7
511,983 + +0.3
511,983 + +0.4
511,983 + -0.3
511,983 + -0.2
511,983 + -2.3
511,983 + -1.0
511,983 + -1.5
511,984 - -0.1
511,984 - -0.2
511,984 - -0.0
511,984 - -0.8
511,984 - +0.4
511,984 - -0.3
511,987 + -0.2
511,991 + +0.3
511,991 + -0.2
511,991 + -0.6
512,011 + -1.5
512,038 + -0.1
512,070 + +1.7
512,079 + -0.3
512,089 - Echvi_0467 0.12 +0.0
512,124 + Echvi_0467 0.20 +0.1
512,179 - Echvi_0467 0.33 -0.4
512,179 - Echvi_0467 0.33 -1.2
512,182 - Echvi_0467 0.34 +0.7
512,182 - Echvi_0467 0.34 -0.6
512,249 + Echvi_0467 0.50 +0.2
512,256 + Echvi_0467 0.52 -0.0
512,257 - Echvi_0467 0.52 -0.4
512,260 + Echvi_0467 0.53 +0.1
512,260 + Echvi_0467 0.53 -0.5
512,260 + Echvi_0467 0.53 -0.7
512,260 + Echvi_0467 0.53 -1.6
512,260 + Echvi_0467 0.53 -0.6
512,260 + Echvi_0467 0.53 -1.6
512,260 + Echvi_0467 0.53 +0.2
512,261 - Echvi_0467 0.53 -0.4
512,261 - Echvi_0467 0.53 -2.3
512,261 - Echvi_0467 0.53 -0.8
512,261 - Echvi_0467 0.53 -0.6
512,261 - Echvi_0467 0.53 -1.5
512,262 + Echvi_0467 0.53 +0.5
512,262 + Echvi_0467 0.53 -0.8
512,278 + Echvi_0467 0.57 -0.5
512,278 + Echvi_0467 0.57 -0.4
512,280 + Echvi_0467 0.57 +0.1
512,280 + Echvi_0467 0.57 -1.4
512,280 + Echvi_0467 0.57 +1.2
512,281 - Echvi_0467 0.58 -2.3
512,281 - Echvi_0467 0.58 -0.8
512,281 - Echvi_0467 0.58 -0.9
512,345 - Echvi_0467 0.73 +0.5
512,345 - Echvi_0467 0.73 +0.6
512,349 - Echvi_0467 0.74 +0.1
512,378 + Echvi_0467 0.81 -1.2
512,382 + Echvi_0467 0.82 +0.4
512,459 + +1.1
512,460 - -1.2
512,490 - -0.5
512,502 + +0.0
512,502 + -1.8
512,503 - -0.5
512,528 + -1.5
512,679 + +0.6
512,694 + -1.8
512,708 - +0.7
512,727 + -1.9
512,727 + +1.2
512,728 - +0.7
512,738 + -2.1
512,738 + -0.2
512,742 + +0.5
512,742 + -0.5
512,742 + -1.3
512,743 - -0.6
512,751 + +1.0
512,752 - +0.5
512,754 - +0.1
512,772 - -1.1
512,777 - -1.6
512,780 + -0.1
512,780 + -0.1
512,781 - -0.7
512,911 - -0.4
513,023 + +0.8
513,024 - -0.8
513,060 + -0.2
513,061 - +1.7
513,061 - -0.3
513,082 - +0.2
513,206 - Echvi_0468 0.15 +1.7
513,270 + Echvi_0468 0.19 -1.5
513,307 + Echvi_0468 0.21 +0.3
513,312 + Echvi_0468 0.22 -1.2
513,312 + Echvi_0468 0.22 +0.3
513,312 + Echvi_0468 0.22 -0.6
513,312 + Echvi_0468 0.22 +0.7
513,313 - Echvi_0468 0.22 +0.4
513,313 - Echvi_0468 0.22 -0.1
513,316 - Echvi_0468 0.22 +0.1
513,412 + Echvi_0468 0.27 -0.7
513,412 + Echvi_0468 0.27 -2.8
513,423 + Echvi_0468 0.28 -0.6
513,451 + Echvi_0468 0.29 -1.9

Or see this region's nucleotide sequence