Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0460 and Echvi_0461 are separated by 14 nucleotides Echvi_0461 and Echvi_0462 are separated by 582 nucleotides Echvi_0462 and Echvi_0463 are separated by 224 nucleotides
Echvi_0460: Echvi_0460 - hypothetical protein, at 503,945 to 504,829
_0460
Echvi_0461: Echvi_0461 - Site-specific recombinase XerD, at 504,844 to 505,023
_0461
Echvi_0462: Echvi_0462 - hypothetical protein, at 505,606 to 505,863
_0462
Echvi_0463: Echvi_0463 - Zinc metalloprotease (elastase), at 506,088 to 508,676
_0463
Position (kb) 505
506 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 505.012 kb on + strand at 505.012 kb on + strand at 505.034 kb on + strand at 505.034 kb on + strand at 505.035 kb on - strand at 505.039 kb on + strand at 505.040 kb on - strand at 505.040 kb on - strand at 505.203 kb on + strand at 505.246 kb on - strand at 505.255 kb on + strand at 505.256 kb on - strand at 505.285 kb on + strand at 505.285 kb on + strand at 505.285 kb on + strand at 505.285 kb on + strand at 505.286 kb on - strand at 505.286 kb on - strand at 505.300 kb on + strand at 505.306 kb on - strand at 505.306 kb on - strand at 505.306 kb on - strand at 505.307 kb on + strand at 505.308 kb on - strand at 505.308 kb on - strand at 505.310 kb on + strand at 505.311 kb on - strand at 505.318 kb on + strand at 505.318 kb on + strand at 505.318 kb on + strand at 505.318 kb on + strand at 505.318 kb on + strand at 505.318 kb on + strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.358 kb on - strand at 505.358 kb on - strand at 505.360 kb on + strand at 505.361 kb on - strand at 505.362 kb on + strand at 505.385 kb on - strand at 505.433 kb on + strand at 505.434 kb on - strand at 505.434 kb on - strand at 505.443 kb on + strand at 505.444 kb on - strand at 505.446 kb on - strand at 505.449 kb on + strand at 505.450 kb on - strand at 505.452 kb on + strand at 505.494 kb on - strand at 505.495 kb on + strand at 505.495 kb on + strand at 505.496 kb on - strand at 505.508 kb on + strand at 505.509 kb on - strand at 505.517 kb on + strand at 505.559 kb on + strand at 505.559 kb on + strand at 505.559 kb on + strand at 505.560 kb on - strand at 505.583 kb on - strand at 505.583 kb on - strand at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.675 kb on - strand, within Echvi_0462 at 505.675 kb on - strand, within Echvi_0462 at 505.677 kb on - strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.682 kb on - strand, within Echvi_0462 at 505.682 kb on - strand, within Echvi_0462 at 505.682 kb on - strand, within Echvi_0462 at 505.684 kb on - strand, within Echvi_0462 at 505.720 kb on + strand, within Echvi_0462 at 505.720 kb on + strand, within Echvi_0462 at 505.721 kb on - strand, within Echvi_0462 at 505.732 kb on + strand, within Echvi_0462 at 505.741 kb on - strand, within Echvi_0462 at 505.780 kb on + strand, within Echvi_0462 at 505.782 kb on + strand, within Echvi_0462 at 505.783 kb on - strand, within Echvi_0462 at 505.794 kb on + strand, within Echvi_0462 at 505.794 kb on + strand, within Echvi_0462 at 505.794 kb on + strand, within Echvi_0462 at 505.803 kb on + strand, within Echvi_0462 at 505.804 kb on - strand, within Echvi_0462 at 505.844 kb on + strand at 505.844 kb on + strand at 505.845 kb on - strand at 505.888 kb on - strand at 505.891 kb on + strand at 505.891 kb on + strand at 505.891 kb on + strand at 505.903 kb on - strand at 505.942 kb on + strand at 505.943 kb on - strand at 505.945 kb on - strand at 505.957 kb on + strand at 505.987 kb on + strand at 505.988 kb on - strand at 505.995 kb on - strand at 506.007 kb on - strand at 506.032 kb on + strand at 506.032 kb on + strand at 506.046 kb on - strand at 506.075 kb on + strand at 506.075 kb on + strand at 506.075 kb on + strand at 506.076 kb on - strand at 506.076 kb on - strand at 506.076 kb on - strand at 506.076 kb on - strand at 506.079 kb on + strand at 506.079 kb on + strand at 506.079 kb on + strand at 506.079 kb on + strand at 506.079 kb on + strand at 506.080 kb on - strand at 506.084 kb on + strand at 506.085 kb on - strand at 506.107 kb on + strand at 506.113 kb on + strand at 506.120 kb on - strand at 506.120 kb on - strand at 506.131 kb on + strand at 506.132 kb on - strand at 506.136 kb on - strand at 506.176 kb on + strand at 506.176 kb on + strand at 506.176 kb on + strand at 506.176 kb on + strand at 506.176 kb on + strand at 506.176 kb on + strand at 506.177 kb on - strand at 506.177 kb on - strand at 506.177 kb on - strand at 506.181 kb on + strand at 506.181 kb on + strand at 506.182 kb on - strand at 506.182 kb on - strand at 506.186 kb on + strand at 506.199 kb on - strand at 506.201 kb on - strand at 506.338 kb on + strand at 506.339 kb on - strand at 506.352 kb on + strand, within Echvi_0463 at 506.355 kb on + strand, within Echvi_0463 at 506.355 kb on + strand, within Echvi_0463 at 506.355 kb on + strand, within Echvi_0463 at 506.355 kb on + strand, within Echvi_0463 at 506.356 kb on - strand, within Echvi_0463 at 506.356 kb on - strand, within Echvi_0463 at 506.356 kb on - strand, within Echvi_0463 at 506.357 kb on + strand, within Echvi_0463 at 506.357 kb on + strand, within Echvi_0463 at 506.357 kb on + strand, within Echvi_0463 at 506.357 kb on + strand, within Echvi_0463 at 506.358 kb on - strand, within Echvi_0463 at 506.435 kb on + strand, within Echvi_0463 at 506.442 kb on - strand, within Echvi_0463 at 506.442 kb on - strand, within Echvi_0463 at 506.442 kb on - strand, within Echvi_0463 at 506.442 kb on - strand, within Echvi_0463 at 506.442 kb on - strand, within Echvi_0463 at 506.443 kb on + strand, within Echvi_0463 at 506.444 kb on - strand, within Echvi_0463 at 506.508 kb on - strand, within Echvi_0463 at 506.523 kb on + strand, within Echvi_0463 at 506.579 kb on + strand, within Echvi_0463 at 506.589 kb on + strand, within Echvi_0463 at 506.590 kb on - strand, within Echvi_0463 at 506.593 kb on - strand, within Echvi_0463 at 506.693 kb on + strand, within Echvi_0463 at 506.736 kb on - strand, within Echvi_0463 at 506.740 kb on + strand, within Echvi_0463 at 506.741 kb on - strand, within Echvi_0463 at 506.741 kb on - strand, within Echvi_0463 at 506.741 kb on - strand, within Echvi_0463 at 506.749 kb on - strand, within Echvi_0463 at 506.768 kb on - strand, within Echvi_0463 at 506.800 kb on + strand, within Echvi_0463 at 506.800 kb on + strand, within Echvi_0463 at 506.801 kb on - strand, within Echvi_0463 at 506.829 kb on + strand, within Echvi_0463 at 506.830 kb on - strand, within Echvi_0463 at 506.843 kb on - strand, within Echvi_0463
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 505,012 + -0.1 505,012 + -2.5 505,034 + -0.8 505,034 + -0.4 505,035 - +1.5 505,039 + +0.5 505,040 - -0.5 505,040 - +0.5 505,203 + +0.1 505,246 - -1.9 505,255 + -0.8 505,256 - -0.3 505,285 + -1.0 505,285 + -1.1 505,285 + -0.0 505,285 + +0.4 505,286 - +0.4 505,286 - -1.5 505,300 + -1.7 505,306 - -0.7 505,306 - +0.4 505,306 - +1.0 505,307 + +1.0 505,308 - -0.5 505,308 - +1.0 505,310 + -0.3 505,311 - +0.2 505,318 + -0.2 505,318 + -2.3 505,318 + -0.9 505,318 + -1.3 505,318 + -0.3 505,318 + -1.0 505,319 - -1.0 505,319 - -0.5 505,319 - -1.2 505,319 - -0.6 505,319 - -0.2 505,358 - -0.9 505,358 - -0.6 505,360 + -0.2 505,361 - -0.3 505,362 + -0.4 505,385 - -1.1 505,433 + -0.5 505,434 - -0.1 505,434 - -0.1 505,443 + -0.9 505,444 - -0.0 505,446 - +0.3 505,449 + +0.1 505,450 - -1.2 505,452 + +0.4 505,494 - -0.8 505,495 + +0.9 505,495 + -0.9 505,496 - -0.3 505,508 + -0.2 505,509 - +0.2 505,517 + -0.8 505,559 + -0.0 505,559 + +0.0 505,559 + -1.0 505,560 - -0.8 505,583 - -1.3 505,583 - -0.0 505,674 + Echvi_0462 0.26 -1.4 505,674 + Echvi_0462 0.26 -1.1 505,674 + Echvi_0462 0.26 -0.7 505,674 + Echvi_0462 0.26 +0.5 505,674 + Echvi_0462 0.26 -2.6 505,674 + Echvi_0462 0.26 -1.4 505,674 + Echvi_0462 0.26 -0.6 505,674 + Echvi_0462 0.26 -0.3 505,674 + Echvi_0462 0.26 -2.5 505,674 + Echvi_0462 0.26 +0.1 505,675 - Echvi_0462 0.27 -0.1 505,675 - Echvi_0462 0.27 +1.3 505,677 - Echvi_0462 0.28 -0.4 505,681 + Echvi_0462 0.29 +0.1 505,681 + Echvi_0462 0.29 -1.4 505,681 + Echvi_0462 0.29 -0.7 505,681 + Echvi_0462 0.29 +2.5 505,681 + Echvi_0462 0.29 -1.2 505,681 + Echvi_0462 0.29 -0.1 505,681 + Echvi_0462 0.29 -0.6 505,681 + Echvi_0462 0.29 -0.1 505,681 + Echvi_0462 0.29 +0.4 505,682 - Echvi_0462 0.29 -0.0 505,682 - Echvi_0462 0.29 -0.3 505,682 - Echvi_0462 0.29 -0.4 505,684 - Echvi_0462 0.30 -0.5 505,720 + Echvi_0462 0.44 -0.6 505,720 + Echvi_0462 0.44 -1.1 505,721 - Echvi_0462 0.45 -0.7 505,732 + Echvi_0462 0.49 +0.2 505,741 - Echvi_0462 0.52 -1.1 505,780 + Echvi_0462 0.67 -0.6 505,782 + Echvi_0462 0.68 +0.1 505,783 - Echvi_0462 0.69 -0.3 505,794 + Echvi_0462 0.73 +0.1 505,794 + Echvi_0462 0.73 -0.5 505,794 + Echvi_0462 0.73 +0.1 505,803 + Echvi_0462 0.76 -0.3 505,804 - Echvi_0462 0.77 +0.8 505,844 + -0.3 505,844 + -0.7 505,845 - -0.4 505,888 - +1.3 505,891 + -1.8 505,891 + -0.2 505,891 + -1.5 505,903 - -1.5 505,942 + -1.1 505,943 - -2.4 505,945 - -0.7 505,957 + +0.2 505,987 + -1.0 505,988 - +0.1 505,995 - +1.6 506,007 - -0.1 506,032 + -0.5 506,032 + +0.7 506,046 - -2.5 506,075 + +0.2 506,075 + -0.5 506,075 + +0.8 506,076 - +2.5 506,076 - -1.6 506,076 - -0.9 506,076 - -0.1 506,079 + +0.7 506,079 + -0.3 506,079 + -0.2 506,079 + -0.3 506,079 + -0.0 506,080 - -0.9 506,084 + -0.2 506,085 - -1.0 506,107 + +0.9 506,113 + -0.1 506,120 - +2.3 506,120 - +1.1 506,131 + +0.1 506,132 - -0.2 506,136 - -1.7 506,176 + +0.3 506,176 + +0.3 506,176 + +1.7 506,176 + -0.9 506,176 + -1.9 506,176 + +0.5 506,177 - -1.0 506,177 - +0.1 506,177 - +0.4 506,181 + -1.1 506,181 + +0.1 506,182 - -0.5 506,182 - -0.1 506,186 + -0.0 506,199 - +1.0 506,201 - -1.8 506,338 + -0.2 506,339 - +0.7 506,352 + Echvi_0463 0.10 +0.7 506,355 + Echvi_0463 0.10 -0.1 506,355 + Echvi_0463 0.10 +4.5 506,355 + Echvi_0463 0.10 -0.0 506,355 + Echvi_0463 0.10 +0.7 506,356 - Echvi_0463 0.10 +0.0 506,356 - Echvi_0463 0.10 -0.8 506,356 - Echvi_0463 0.10 -0.6 506,357 + Echvi_0463 0.10 -1.0 506,357 + Echvi_0463 0.10 +1.4 506,357 + Echvi_0463 0.10 +1.6 506,357 + Echvi_0463 0.10 +0.2 506,358 - Echvi_0463 0.10 -0.4 506,435 + Echvi_0463 0.13 +0.7 506,442 - Echvi_0463 0.14 +0.4 506,442 - Echvi_0463 0.14 -0.0 506,442 - Echvi_0463 0.14 -2.1 506,442 - Echvi_0463 0.14 -0.0 506,442 - Echvi_0463 0.14 -1.2 506,443 + Echvi_0463 0.14 +1.0 506,444 - Echvi_0463 0.14 +0.3 506,508 - Echvi_0463 0.16 -1.0 506,523 + Echvi_0463 0.17 +0.9 506,579 + Echvi_0463 0.19 +2.1 506,589 + Echvi_0463 0.19 +0.0 506,590 - Echvi_0463 0.19 +0.9 506,593 - Echvi_0463 0.20 -0.8 506,693 + Echvi_0463 0.23 +1.7 506,736 - Echvi_0463 0.25 +0.2 506,740 + Echvi_0463 0.25 +0.1 506,741 - Echvi_0463 0.25 -0.9 506,741 - Echvi_0463 0.25 +0.4 506,741 - Echvi_0463 0.25 -0.1 506,749 - Echvi_0463 0.26 -0.9 506,768 - Echvi_0463 0.26 -1.1 506,800 + Echvi_0463 0.28 -0.4 506,800 + Echvi_0463 0.28 +0.1 506,801 - Echvi_0463 0.28 +1.7 506,829 + Echvi_0463 0.29 -1.2 506,830 - Echvi_0463 0.29 -0.3 506,843 - Echvi_0463 0.29 -0.1
Or see this region's nucleotide sequence