Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0402

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0401 and Echvi_0402 are separated by 18 nucleotidesEchvi_0402 and Echvi_0403 are separated by 4 nucleotides Echvi_0401: Echvi_0401 - SusD family., at 428,473 to 429,894 _0401 Echvi_0402: Echvi_0402 - TonB-linked outer membrane protein, SusC/RagA family, at 429,913 to 433,086 _0402 Echvi_0403: Echvi_0403 - Endoglucanase, at 433,091 to 437,203 _0403 Position (kb) 429 430 431 432 433 434Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 428.972 kb on + strand, within Echvi_0401at 429.054 kb on + strand, within Echvi_0401at 429.068 kb on + strand, within Echvi_0401at 429.166 kb on + strand, within Echvi_0401at 429.166 kb on + strand, within Echvi_0401at 429.176 kb on + strand, within Echvi_0401at 429.177 kb on - strand, within Echvi_0401at 429.177 kb on - strand, within Echvi_0401at 429.243 kb on - strand, within Echvi_0401at 429.285 kb on - strand, within Echvi_0401at 429.396 kb on - strand, within Echvi_0401at 429.537 kb on + strand, within Echvi_0401at 429.537 kb on + strand, within Echvi_0401at 429.709 kb on - strand, within Echvi_0401at 429.711 kb on - strand, within Echvi_0401at 429.711 kb on - strand, within Echvi_0401at 429.726 kb on + strand, within Echvi_0401at 429.726 kb on + strand, within Echvi_0401at 429.726 kb on + strand, within Echvi_0401at 429.728 kb on + strand, within Echvi_0401at 429.749 kb on + strand, within Echvi_0401at 429.749 kb on + strand, within Echvi_0401at 429.750 kb on - strand, within Echvi_0401at 429.794 kb on + strandat 429.794 kb on + strandat 429.874 kb on + strandat 429.875 kb on - strandat 429.880 kb on + strandat 429.881 kb on - strandat 429.884 kb on + strandat 429.885 kb on - strandat 429.904 kb on - strandat 429.960 kb on - strandat 429.969 kb on - strandat 430.031 kb on + strandat 430.044 kb on + strandat 430.044 kb on + strandat 430.046 kb on + strandat 430.046 kb on + strandat 430.046 kb on + strandat 430.046 kb on + strandat 430.047 kb on - strandat 430.059 kb on + strandat 430.119 kb on + strandat 430.119 kb on + strandat 430.132 kb on - strandat 430.151 kb on + strandat 430.170 kb on - strandat 430.328 kb on + strand, within Echvi_0402at 430.410 kb on + strand, within Echvi_0402at 430.410 kb on + strand, within Echvi_0402at 430.555 kb on + strand, within Echvi_0402at 430.563 kb on + strand, within Echvi_0402at 430.563 kb on + strand, within Echvi_0402at 430.577 kb on + strand, within Echvi_0402at 430.600 kb on + strand, within Echvi_0402at 430.600 kb on + strand, within Echvi_0402at 430.600 kb on + strand, within Echvi_0402at 430.601 kb on - strand, within Echvi_0402at 430.601 kb on - strand, within Echvi_0402at 430.641 kb on + strand, within Echvi_0402at 430.665 kb on + strand, within Echvi_0402at 430.666 kb on - strand, within Echvi_0402at 430.676 kb on - strand, within Echvi_0402at 430.995 kb on - strand, within Echvi_0402at 431.043 kb on + strand, within Echvi_0402at 431.106 kb on + strand, within Echvi_0402at 431.155 kb on - strand, within Echvi_0402at 431.231 kb on + strand, within Echvi_0402at 431.231 kb on + strand, within Echvi_0402at 431.231 kb on + strand, within Echvi_0402at 431.231 kb on + strand, within Echvi_0402at 431.232 kb on - strand, within Echvi_0402at 431.232 kb on - strand, within Echvi_0402at 431.232 kb on - strand, within Echvi_0402at 431.235 kb on + strand, within Echvi_0402at 431.235 kb on + strand, within Echvi_0402at 431.237 kb on + strand, within Echvi_0402at 431.237 kb on + strand, within Echvi_0402at 431.237 kb on + strand, within Echvi_0402at 431.238 kb on - strand, within Echvi_0402at 431.238 kb on - strand, within Echvi_0402at 431.242 kb on + strand, within Echvi_0402at 431.242 kb on + strand, within Echvi_0402at 431.242 kb on + strand, within Echvi_0402at 431.282 kb on + strand, within Echvi_0402at 431.283 kb on - strand, within Echvi_0402at 431.299 kb on + strand, within Echvi_0402at 431.300 kb on - strand, within Echvi_0402at 431.319 kb on - strand, within Echvi_0402at 431.360 kb on - strand, within Echvi_0402at 431.443 kb on - strand, within Echvi_0402at 431.553 kb on + strand, within Echvi_0402at 431.554 kb on - strand, within Echvi_0402at 431.564 kb on - strand, within Echvi_0402at 431.567 kb on + strand, within Echvi_0402at 431.567 kb on + strand, within Echvi_0402at 431.567 kb on + strand, within Echvi_0402at 431.568 kb on - strand, within Echvi_0402at 431.568 kb on - strand, within Echvi_0402at 431.589 kb on + strand, within Echvi_0402at 431.590 kb on - strand, within Echvi_0402at 431.590 kb on - strand, within Echvi_0402at 431.624 kb on + strand, within Echvi_0402at 431.635 kb on - strand, within Echvi_0402at 431.638 kb on + strand, within Echvi_0402at 431.639 kb on - strand, within Echvi_0402at 431.639 kb on - strand, within Echvi_0402at 431.665 kb on - strand, within Echvi_0402at 431.730 kb on + strand, within Echvi_0402at 431.745 kb on + strand, within Echvi_0402at 431.750 kb on + strand, within Echvi_0402at 431.832 kb on + strand, within Echvi_0402at 431.854 kb on + strand, within Echvi_0402at 431.856 kb on + strand, within Echvi_0402at 431.857 kb on - strand, within Echvi_0402at 431.858 kb on + strand, within Echvi_0402at 431.888 kb on + strand, within Echvi_0402at 431.937 kb on + strand, within Echvi_0402at 431.937 kb on + strand, within Echvi_0402at 431.975 kb on + strand, within Echvi_0402at 431.975 kb on + strand, within Echvi_0402at 431.975 kb on + strand, within Echvi_0402at 431.975 kb on + strand, within Echvi_0402at 431.975 kb on + strand, within Echvi_0402at 431.978 kb on + strand, within Echvi_0402at 431.978 kb on + strand, within Echvi_0402at 431.979 kb on - strand, within Echvi_0402at 431.994 kb on + strand, within Echvi_0402at 431.994 kb on + strand, within Echvi_0402at 432.017 kb on + strand, within Echvi_0402at 432.046 kb on - strand, within Echvi_0402at 432.068 kb on - strand, within Echvi_0402at 432.103 kb on + strand, within Echvi_0402at 432.125 kb on - strand, within Echvi_0402at 432.125 kb on - strand, within Echvi_0402at 432.214 kb on + strand, within Echvi_0402at 432.228 kb on + strand, within Echvi_0402at 432.235 kb on + strand, within Echvi_0402at 432.304 kb on - strand, within Echvi_0402at 432.306 kb on + strand, within Echvi_0402at 432.339 kb on - strand, within Echvi_0402at 432.398 kb on - strand, within Echvi_0402at 432.398 kb on - strand, within Echvi_0402at 432.398 kb on - strand, within Echvi_0402at 432.399 kb on + strand, within Echvi_0402at 432.399 kb on + strand, within Echvi_0402at 432.399 kb on + strand, within Echvi_0402at 432.415 kb on + strandat 432.415 kb on + strand, within Echvi_0402at 432.415 kb on + strand, within Echvi_0402at 432.528 kb on - strand, within Echvi_0402at 432.581 kb on - strandat 432.667 kb on + strand, within Echvi_0402at 432.673 kb on + strand, within Echvi_0402at 432.700 kb on + strand, within Echvi_0402at 432.701 kb on - strand, within Echvi_0402at 432.711 kb on + strand, within Echvi_0402at 432.768 kb on + strand, within Echvi_0402at 432.768 kb on + strand, within Echvi_0402at 432.842 kb on + strandat 432.967 kb on - strandat 432.994 kb on - strandat 433.068 kb on + strandat 433.075 kb on + strandat 433.086 kb on + strandat 433.092 kb on + strandat 433.097 kb on + strandat 433.177 kb on + strandat 433.184 kb on + strandat 433.216 kb on + strandat 433.255 kb on + strandat 433.273 kb on + strandat 433.273 kb on + strandat 433.273 kb on + strandat 433.438 kb on + strandat 433.439 kb on - strandat 433.439 kb on - strandat 433.439 kb on - strandat 433.445 kb on + strandat 433.445 kb on + strandat 433.445 kb on + strandat 433.451 kb on + strandat 433.459 kb on + strandat 433.510 kb on + strand, within Echvi_0403at 433.510 kb on + strand, within Echvi_0403at 433.511 kb on - strand, within Echvi_0403at 433.513 kb on + strand, within Echvi_0403at 433.558 kb on + strand, within Echvi_0403at 433.558 kb on + strand, within Echvi_0403at 433.560 kb on + strand, within Echvi_0403at 433.560 kb on + strand, within Echvi_0403at 433.567 kb on + strand, within Echvi_0403at 433.567 kb on + strand, within Echvi_0403at 433.567 kb on + strand, within Echvi_0403at 433.568 kb on - strand, within Echvi_0403at 433.568 kb on - strand, within Echvi_0403at 433.569 kb on + strand, within Echvi_0403at 433.569 kb on + strand, within Echvi_0403at 433.570 kb on - strand, within Echvi_0403at 433.625 kb on + strand, within Echvi_0403at 433.681 kb on + strand, within Echvi_0403at 433.692 kb on + strand, within Echvi_0403at 433.692 kb on + strand, within Echvi_0403at 433.752 kb on + strand, within Echvi_0403at 433.804 kb on + strand, within Echvi_0403at 433.806 kb on + strand, within Echvi_0403at 433.829 kb on + strand, within Echvi_0403at 433.829 kb on + strand, within Echvi_0403at 433.830 kb on - strand, within Echvi_0403at 433.867 kb on + strand, within Echvi_0403at 433.869 kb on + strand, within Echvi_0403at 433.869 kb on + strand, within Echvi_0403at 433.869 kb on + strand, within Echvi_0403at 433.869 kb on + strand, within Echvi_0403at 433.870 kb on - strand, within Echvi_0403at 433.870 kb on - strand, within Echvi_0403at 433.931 kb on + strand, within Echvi_0403at 433.975 kb on + strandat 433.982 kb on - strand, within Echvi_0403at 434.028 kb on + strand, within Echvi_0403at 434.035 kb on + strand, within Echvi_0403at 434.036 kb on - strand, within Echvi_0403at 434.037 kb on + strand, within Echvi_0403

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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428,972 + Echvi_0401 0.35 +0.6
429,054 + Echvi_0401 0.41 -2.0
429,068 + Echvi_0401 0.42 +1.5
429,166 + Echvi_0401 0.49 -0.1
429,166 + Echvi_0401 0.49 -2.0
429,176 + Echvi_0401 0.49 -0.9
429,177 - Echvi_0401 0.50 -0.4
429,177 - Echvi_0401 0.50 -0.8
429,243 - Echvi_0401 0.54 +0.6
429,285 - Echvi_0401 0.57 -0.3
429,396 - Echvi_0401 0.65 -1.0
429,537 + Echvi_0401 0.75 -0.7
429,537 + Echvi_0401 0.75 -0.4
429,709 - Echvi_0401 0.87 -0.2
429,711 - Echvi_0401 0.87 +1.7
429,711 - Echvi_0401 0.87 -1.3
429,726 + Echvi_0401 0.88 +0.0
429,726 + Echvi_0401 0.88 -0.5
429,726 + Echvi_0401 0.88 -1.2
429,728 + Echvi_0401 0.88 -0.4
429,749 + Echvi_0401 0.90 +0.6
429,749 + Echvi_0401 0.90 -0.7
429,750 - Echvi_0401 0.90 +0.1
429,794 + +1.0
429,794 + -1.1
429,874 + +0.2
429,875 - +0.8
429,880 + -0.2
429,881 - +0.7
429,884 + -1.1
429,885 - -0.3
429,904 - -0.3
429,960 - -2.4
429,969 - -1.2
430,031 + -0.3
430,044 + +0.0
430,044 + +1.2
430,046 + -0.5
430,046 + +0.1
430,046 + +3.7
430,046 + +0.2
430,047 - -0.5
430,059 + -1.3
430,119 + +0.5
430,119 + +0.5
430,132 - -1.4
430,151 + -1.6
430,170 - +1.5
430,328 + Echvi_0402 0.13 -1.2
430,410 + Echvi_0402 0.16 +1.3
430,410 + Echvi_0402 0.16 +0.6
430,555 + Echvi_0402 0.20 -0.3
430,563 + Echvi_0402 0.20 -3.3
430,563 + Echvi_0402 0.20 -0.7
430,577 + Echvi_0402 0.21 +0.1
430,600 + Echvi_0402 0.22 +0.0
430,600 + Echvi_0402 0.22 -2.4
430,600 + Echvi_0402 0.22 +0.7
430,601 - Echvi_0402 0.22 -0.6
430,601 - Echvi_0402 0.22 -0.5
430,641 + Echvi_0402 0.23 +0.4
430,665 + Echvi_0402 0.24 -0.2
430,666 - Echvi_0402 0.24 +0.4
430,676 - Echvi_0402 0.24 -0.7
430,995 - Echvi_0402 0.34 -0.4
431,043 + Echvi_0402 0.36 +1.1
431,106 + Echvi_0402 0.38 -2.5
431,155 - Echvi_0402 0.39 -0.3
431,231 + Echvi_0402 0.42 +0.5
431,231 + Echvi_0402 0.42 -0.9
431,231 + Echvi_0402 0.42 -0.2
431,231 + Echvi_0402 0.42 -0.3
431,232 - Echvi_0402 0.42 +0.0
431,232 - Echvi_0402 0.42 -0.4
431,232 - Echvi_0402 0.42 -0.0
431,235 + Echvi_0402 0.42 -2.1
431,235 + Echvi_0402 0.42 -0.2
431,237 + Echvi_0402 0.42 +0.3
431,237 + Echvi_0402 0.42 -0.9
431,237 + Echvi_0402 0.42 +0.6
431,238 - Echvi_0402 0.42 +1.5
431,238 - Echvi_0402 0.42 -0.2
431,242 + Echvi_0402 0.42 +1.0
431,242 + Echvi_0402 0.42 +0.1
431,242 + Echvi_0402 0.42 +0.6
431,282 + Echvi_0402 0.43 -1.2
431,283 - Echvi_0402 0.43 +0.7
431,299 + Echvi_0402 0.44 +1.2
431,300 - Echvi_0402 0.44 -1.0
431,319 - Echvi_0402 0.44 +1.7
431,360 - Echvi_0402 0.46 -1.5
431,443 - Echvi_0402 0.48 -0.4
431,553 + Echvi_0402 0.52 -0.8
431,554 - Echvi_0402 0.52 +0.1
431,564 - Echvi_0402 0.52 -0.4
431,567 + Echvi_0402 0.52 -1.9
431,567 + Echvi_0402 0.52 +0.1
431,567 + Echvi_0402 0.52 +0.7
431,568 - Echvi_0402 0.52 +0.1
431,568 - Echvi_0402 0.52 -0.2
431,589 + Echvi_0402 0.53 -1.8
431,590 - Echvi_0402 0.53 +0.1
431,590 - Echvi_0402 0.53 +0.5
431,624 + Echvi_0402 0.54 +0.4
431,635 - Echvi_0402 0.54 -0.4
431,638 + Echvi_0402 0.54 +0.1
431,639 - Echvi_0402 0.54 +0.7
431,639 - Echvi_0402 0.54 -0.3
431,665 - Echvi_0402 0.55 +0.3
431,730 + Echvi_0402 0.57 -0.4
431,745 + Echvi_0402 0.58 +2.0
431,750 + Echvi_0402 0.58 +0.1
431,832 + Echvi_0402 0.60 -0.9
431,854 + Echvi_0402 0.61 +1.0
431,856 + Echvi_0402 0.61 -1.9
431,857 - Echvi_0402 0.61 +0.3
431,858 + Echvi_0402 0.61 -0.2
431,888 + Echvi_0402 0.62 -0.6
431,937 + Echvi_0402 0.64 +0.5
431,937 + Echvi_0402 0.64 -0.6
431,975 + Echvi_0402 0.65 +0.1
431,975 + Echvi_0402 0.65 +0.5
431,975 + Echvi_0402 0.65 -0.4
431,975 + Echvi_0402 0.65 -0.9
431,975 + Echvi_0402 0.65 -0.6
431,978 + Echvi_0402 0.65 -1.3
431,978 + Echvi_0402 0.65 +0.6
431,979 - Echvi_0402 0.65 -1.5
431,994 + Echvi_0402 0.66 +0.2
431,994 + Echvi_0402 0.66 -0.0
432,017 + Echvi_0402 0.66 +0.5
432,046 - Echvi_0402 0.67 -1.8
432,068 - Echvi_0402 0.68 -1.8
432,103 + Echvi_0402 0.69 -0.2
432,125 - Echvi_0402 0.70 +0.1
432,125 - Echvi_0402 0.70 +0.1
432,214 + Echvi_0402 0.72 -0.8
432,228 + Echvi_0402 0.73 -0.9
432,235 + Echvi_0402 0.73 +0.4
432,304 - Echvi_0402 0.75 -1.1
432,306 + Echvi_0402 0.75 -0.4
432,339 - Echvi_0402 0.76 -0.5
432,398 - Echvi_0402 0.78 +0.1
432,398 - Echvi_0402 0.78 +0.1
432,398 - Echvi_0402 0.78 +0.9
432,399 + Echvi_0402 0.78 +0.9
432,399 + Echvi_0402 0.78 -0.1
432,399 + Echvi_0402 0.78 -0.9
432,415 + +1.7
432,415 + Echvi_0402 0.79 -1.2
432,415 + Echvi_0402 0.79 -0.3
432,528 - Echvi_0402 0.82 +1.4
432,581 - +0.1
432,667 + Echvi_0402 0.87 -0.1
432,673 + Echvi_0402 0.87 +0.5
432,700 + Echvi_0402 0.88 -0.4
432,701 - Echvi_0402 0.88 -1.5
432,711 + Echvi_0402 0.88 +0.8
432,768 + Echvi_0402 0.90 -0.7
432,768 + Echvi_0402 0.90 -0.1
432,842 + -0.4
432,967 - +1.7
432,994 - +0.2
433,068 + -0.5
433,075 + -0.6
433,086 + +0.3
433,092 + +0.3
433,097 + -0.3
433,177 + -0.0
433,184 + +0.7
433,216 + +0.3
433,255 + +0.2
433,273 + -1.0
433,273 + -0.9
433,273 + -0.8
433,438 + +0.5
433,439 - -0.3
433,439 - -0.3
433,439 - -0.4
433,445 + +0.7
433,445 + -0.8
433,445 + -0.3
433,451 + +1.0
433,459 + +0.1
433,510 + Echvi_0403 0.10 +2.7
433,510 + Echvi_0403 0.10 -0.6
433,511 - Echvi_0403 0.10 +0.3
433,513 + Echvi_0403 0.10 -0.9
433,558 + Echvi_0403 0.11 -0.0
433,558 + Echvi_0403 0.11 -0.2
433,560 + Echvi_0403 0.11 -0.3
433,560 + Echvi_0403 0.11 -0.0
433,567 + Echvi_0403 0.12 +0.6
433,567 + Echvi_0403 0.12 +1.3
433,567 + Echvi_0403 0.12 +0.7
433,568 - Echvi_0403 0.12 +0.7
433,568 - Echvi_0403 0.12 +2.3
433,569 + Echvi_0403 0.12 -0.4
433,569 + Echvi_0403 0.12 +0.1
433,570 - Echvi_0403 0.12 -0.5
433,625 + Echvi_0403 0.13 -0.4
433,681 + Echvi_0403 0.14 +1.1
433,692 + Echvi_0403 0.15 -0.9
433,692 + Echvi_0403 0.15 +0.3
433,752 + Echvi_0403 0.16 +0.2
433,804 + Echvi_0403 0.17 +0.4
433,806 + Echvi_0403 0.17 -0.4
433,829 + Echvi_0403 0.18 -0.8
433,829 + Echvi_0403 0.18 +0.7
433,830 - Echvi_0403 0.18 +1.3
433,867 + Echvi_0403 0.19 +0.5
433,869 + Echvi_0403 0.19 -0.4
433,869 + Echvi_0403 0.19 -0.3
433,869 + Echvi_0403 0.19 +2.0
433,869 + Echvi_0403 0.19 -0.5
433,870 - Echvi_0403 0.19 -1.0
433,870 - Echvi_0403 0.19 -0.3
433,931 + Echvi_0403 0.20 -1.6
433,975 + +1.1
433,982 - Echvi_0403 0.22 -0.3
434,028 + Echvi_0403 0.23 -0.8
434,035 + Echvi_0403 0.23 -0.5
434,036 - Echvi_0403 0.23 -0.3
434,037 + Echvi_0403 0.23 -0.1

Or see this region's nucleotide sequence