Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0365

Experiment: m.b. Nalidixic 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0364 and Echvi_0365 are separated by 281 nucleotidesEchvi_0365 and Echvi_0366 are separated by 160 nucleotides Echvi_0364: Echvi_0364 - hypothetical protein, at 391,513 to 392,265 _0364 Echvi_0365: Echvi_0365 - adenylosuccinate lyase, at 392,547 to 393,890 _0365 Echvi_0366: Echvi_0366 - Uncharacterized protein conserved in bacteria containing a pentein-type domain, at 394,051 to 394,995 _0366 Position (kb) 392 393 394Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 391.566 kb on - strandat 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.655 kb on - strand, within Echvi_0364at 391.655 kb on - strand, within Echvi_0364at 391.655 kb on - strand, within Echvi_0364at 391.655 kb on - strand, within Echvi_0364at 391.658 kb on + strand, within Echvi_0364at 391.666 kb on + strand, within Echvi_0364at 391.703 kb on - strand, within Echvi_0364at 391.730 kb on - strand, within Echvi_0364at 391.735 kb on - strand, within Echvi_0364at 391.735 kb on - strand, within Echvi_0364at 391.735 kb on - strand, within Echvi_0364at 391.739 kb on - strand, within Echvi_0364at 391.751 kb on - strand, within Echvi_0364at 391.751 kb on - strand, within Echvi_0364at 391.760 kb on - strand, within Echvi_0364at 391.780 kb on + strand, within Echvi_0364at 391.917 kb on - strand, within Echvi_0364at 391.917 kb on - strand, within Echvi_0364at 392.008 kb on + strand, within Echvi_0364at 392.008 kb on + strand, within Echvi_0364at 392.008 kb on + strand, within Echvi_0364at 392.008 kb on + strand, within Echvi_0364at 392.112 kb on + strand, within Echvi_0364at 392.166 kb on - strand, within Echvi_0364at 392.168 kb on - strand, within Echvi_0364at 392.168 kb on - strand, within Echvi_0364at 392.169 kb on + strand, within Echvi_0364at 392.169 kb on + strand, within Echvi_0364at 392.169 kb on + strand, within Echvi_0364at 392.170 kb on - strand, within Echvi_0364at 392.180 kb on + strand, within Echvi_0364at 392.189 kb on - strand, within Echvi_0364at 392.295 kb on + strandat 392.450 kb on - strandat 392.457 kb on - strandat 392.500 kb on + strandat 392.524 kb on + strandat 393.896 kb on - strandat 393.923 kb on + strandat 393.923 kb on + strandat 393.923 kb on + strandat 393.923 kb on + strandat 393.924 kb on - strandat 393.930 kb on + strandat 393.930 kb on + strandat 394.029 kb on + strandat 394.104 kb on + strandat 394.135 kb on - strandat 394.161 kb on + strand, within Echvi_0366at 394.162 kb on - strand, within Echvi_0366at 394.163 kb on + strand, within Echvi_0366at 394.195 kb on - strand, within Echvi_0366at 394.206 kb on - strand, within Echvi_0366at 394.263 kb on + strand, within Echvi_0366at 394.263 kb on + strand, within Echvi_0366at 394.263 kb on + strand, within Echvi_0366at 394.263 kb on + strand, within Echvi_0366at 394.264 kb on - strand, within Echvi_0366at 394.264 kb on - strand, within Echvi_0366at 394.440 kb on + strand, within Echvi_0366at 394.440 kb on + strand, within Echvi_0366at 394.440 kb on + strand, within Echvi_0366at 394.542 kb on - strand, within Echvi_0366at 394.618 kb on - strand, within Echvi_0366at 394.642 kb on - strand, within Echvi_0366at 394.660 kb on + strand, within Echvi_0366at 394.661 kb on - strand, within Echvi_0366at 394.661 kb on - strand, within Echvi_0366at 394.666 kb on + strand, within Echvi_0366at 394.720 kb on + strand, within Echvi_0366

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
remove
391,566 - +0.0
391,654 + Echvi_0364 0.19 +0.6
391,654 + Echvi_0364 0.19 +1.0
391,654 + Echvi_0364 0.19 -0.0
391,654 + Echvi_0364 0.19 -0.8
391,654 + Echvi_0364 0.19 +0.7
391,654 + Echvi_0364 0.19 -0.4
391,655 - Echvi_0364 0.19 +0.3
391,655 - Echvi_0364 0.19 +0.1
391,655 - Echvi_0364 0.19 -0.5
391,655 - Echvi_0364 0.19 -0.5
391,658 + Echvi_0364 0.19 -0.6
391,666 + Echvi_0364 0.20 -0.1
391,703 - Echvi_0364 0.25 -0.9
391,730 - Echvi_0364 0.29 +0.2
391,735 - Echvi_0364 0.29 +1.1
391,735 - Echvi_0364 0.29 +1.1
391,735 - Echvi_0364 0.29 -0.2
391,739 - Echvi_0364 0.30 +1.2
391,751 - Echvi_0364 0.32 +1.4
391,751 - Echvi_0364 0.32 +0.4
391,760 - Echvi_0364 0.33 +0.6
391,780 + Echvi_0364 0.35 +0.9
391,917 - Echvi_0364 0.54 -0.4
391,917 - Echvi_0364 0.54 -0.2
392,008 + Echvi_0364 0.66 +0.5
392,008 + Echvi_0364 0.66 -0.0
392,008 + Echvi_0364 0.66 -0.3
392,008 + Echvi_0364 0.66 +1.5
392,112 + Echvi_0364 0.80 +0.3
392,166 - Echvi_0364 0.87 -1.7
392,168 - Echvi_0364 0.87 +0.4
392,168 - Echvi_0364 0.87 +0.3
392,169 + Echvi_0364 0.87 +0.6
392,169 + Echvi_0364 0.87 -0.2
392,169 + Echvi_0364 0.87 +1.5
392,170 - Echvi_0364 0.87 +1.1
392,180 + Echvi_0364 0.89 +1.5
392,189 - Echvi_0364 0.90 -0.8
392,295 + +1.1
392,450 - +0.6
392,457 - -1.1
392,500 + +1.2
392,524 + +0.2
393,896 - -1.7
393,923 + -0.7
393,923 + -0.3
393,923 + -1.1
393,923 + +4.3
393,924 - +0.1
393,930 + -1.1
393,930 + -0.8
394,029 + +0.4
394,104 + -0.3
394,135 - +1.6
394,161 + Echvi_0366 0.12 -0.3
394,162 - Echvi_0366 0.12 -0.1
394,163 + Echvi_0366 0.12 +2.7
394,195 - Echvi_0366 0.15 -0.6
394,206 - Echvi_0366 0.16 -0.2
394,263 + Echvi_0366 0.22 -2.1
394,263 + Echvi_0366 0.22 -1.0
394,263 + Echvi_0366 0.22 +0.5
394,263 + Echvi_0366 0.22 -1.6
394,264 - Echvi_0366 0.23 -0.3
394,264 - Echvi_0366 0.23 +2.3
394,440 + Echvi_0366 0.41 -0.7
394,440 + Echvi_0366 0.41 -1.4
394,440 + Echvi_0366 0.41 +0.1
394,542 - Echvi_0366 0.52 +0.4
394,618 - Echvi_0366 0.60 +1.3
394,642 - Echvi_0366 0.63 -2.0
394,660 + Echvi_0366 0.64 +1.6
394,661 - Echvi_0366 0.65 -0.1
394,661 - Echvi_0366 0.65 -1.8
394,666 + Echvi_0366 0.65 -1.0
394,720 + Echvi_0366 0.71 -0.3

Or see this region's nucleotide sequence