Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0281

Experiment: m.b. Nalidixic 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0280 and Echvi_0281 are separated by 19 nucleotidesEchvi_0281 and Echvi_0282 are separated by 101 nucleotides Echvi_0280: Echvi_0280 - TonB-linked outer membrane protein, SusC/RagA family, at 286,070 to 289,246 _0280 Echvi_0281: Echvi_0281 - SusD family., at 289,266 to 291,128 _0281 Echvi_0282: Echvi_0282 - ASPIC and UnbV., at 291,230 to 294,565 _0282 Position (kb) 289 290 291 292Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 288.307 kb on - strand, within Echvi_0280at 288.341 kb on + strand, within Echvi_0280at 288.494 kb on + strand, within Echvi_0280at 288.495 kb on - strand, within Echvi_0280at 288.495 kb on - strand, within Echvi_0280at 288.495 kb on - strand, within Echvi_0280at 288.495 kb on - strand, within Echvi_0280at 288.496 kb on + strand, within Echvi_0280at 288.508 kb on - strand, within Echvi_0280at 288.518 kb on + strand, within Echvi_0280at 288.618 kb on - strand, within Echvi_0280at 288.710 kb on + strand, within Echvi_0280at 288.711 kb on - strand, within Echvi_0280at 288.844 kb on - strand, within Echvi_0280at 288.844 kb on - strand, within Echvi_0280at 288.869 kb on + strand, within Echvi_0280at 288.989 kb on + strandat 288.989 kb on + strandat 288.990 kb on - strandat 289.010 kb on + strandat 289.031 kb on + strandat 289.032 kb on - strandat 289.161 kb on + strandat 289.162 kb on - strandat 289.215 kb on + strandat 289.215 kb on + strandat 289.216 kb on - strandat 289.231 kb on - strandat 289.244 kb on + strandat 289.251 kb on + strandat 289.284 kb on - strandat 289.290 kb on + strandat 289.290 kb on + strandat 289.291 kb on - strandat 289.322 kb on - strandat 289.334 kb on + strandat 289.335 kb on - strandat 289.387 kb on + strandat 289.387 kb on + strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.432 kb on - strandat 289.526 kb on + strand, within Echvi_0281at 289.526 kb on + strand, within Echvi_0281at 289.530 kb on - strand, within Echvi_0281at 289.592 kb on + strand, within Echvi_0281at 289.593 kb on - strand, within Echvi_0281at 289.593 kb on - strand, within Echvi_0281at 289.593 kb on - strand, within Echvi_0281at 289.593 kb on - strand, within Echvi_0281at 289.593 kb on - strand, within Echvi_0281at 289.593 kb on - strand, within Echvi_0281at 289.596 kb on + strand, within Echvi_0281at 289.596 kb on + strand, within Echvi_0281at 289.597 kb on - strand, within Echvi_0281at 289.597 kb on - strand, within Echvi_0281at 289.597 kb on - strand, within Echvi_0281at 289.597 kb on - strand, within Echvi_0281at 289.597 kb on - strand, within Echvi_0281at 289.597 kb on - strand, within Echvi_0281at 289.602 kb on + strand, within Echvi_0281at 289.602 kb on + strand, within Echvi_0281at 289.602 kb on + strand, within Echvi_0281at 289.602 kb on + strand, within Echvi_0281at 289.603 kb on - strand, within Echvi_0281at 289.603 kb on - strand, within Echvi_0281at 289.617 kb on - strand, within Echvi_0281at 289.637 kb on - strand, within Echvi_0281at 289.637 kb on - strand, within Echvi_0281at 289.697 kb on + strand, within Echvi_0281at 289.710 kb on + strand, within Echvi_0281at 289.731 kb on + strand, within Echvi_0281at 289.734 kb on + strand, within Echvi_0281at 289.764 kb on + strand, within Echvi_0281at 289.785 kb on + strand, within Echvi_0281at 289.832 kb on - strand, within Echvi_0281at 289.832 kb on - strand, within Echvi_0281at 289.895 kb on + strand, within Echvi_0281at 289.927 kb on + strand, within Echvi_0281at 289.935 kb on + strand, within Echvi_0281at 290.022 kb on + strand, within Echvi_0281at 290.113 kb on + strand, within Echvi_0281at 290.113 kb on + strand, within Echvi_0281at 290.151 kb on + strand, within Echvi_0281at 290.319 kb on + strand, within Echvi_0281at 290.380 kb on - strand, within Echvi_0281at 290.558 kb on + strand, within Echvi_0281at 290.558 kb on + strand, within Echvi_0281at 290.581 kb on - strand, within Echvi_0281at 290.583 kb on - strand, within Echvi_0281at 290.592 kb on + strand, within Echvi_0281at 290.593 kb on - strand, within Echvi_0281at 290.625 kb on - strand, within Echvi_0281at 290.639 kb on + strand, within Echvi_0281at 290.694 kb on + strand, within Echvi_0281at 290.695 kb on - strand, within Echvi_0281at 290.699 kb on - strand, within Echvi_0281at 290.844 kb on + strand, within Echvi_0281at 290.845 kb on - strand, within Echvi_0281at 290.991 kb on + strandat 290.991 kb on + strandat 291.014 kb on - strandat 291.165 kb on + strandat 291.165 kb on + strandat 291.166 kb on - strandat 291.166 kb on - strandat 291.166 kb on - strandat 291.187 kb on + strandat 291.200 kb on + strandat 291.204 kb on + strandat 291.223 kb on + strandat 291.223 kb on + strandat 291.223 kb on + strandat 291.223 kb on + strandat 291.223 kb on + strandat 291.223 kb on + strandat 291.224 kb on - strandat 291.230 kb on - strandat 291.235 kb on + strandat 291.235 kb on + strandat 291.235 kb on + strandat 291.240 kb on + strandat 291.240 kb on + strandat 291.285 kb on + strandat 291.286 kb on - strandat 291.292 kb on + strandat 291.292 kb on + strandat 291.292 kb on + strandat 291.293 kb on - strandat 291.417 kb on - strandat 291.417 kb on - strandat 291.486 kb on - strandat 291.554 kb on - strandat 291.642 kb on + strand, within Echvi_0282at 291.644 kb on + strand, within Echvi_0282at 291.644 kb on + strand, within Echvi_0282at 291.644 kb on + strand, within Echvi_0282at 291.644 kb on + strand, within Echvi_0282at 291.644 kb on + strand, within Echvi_0282at 291.644 kb on + strand, within Echvi_0282at 291.645 kb on - strand, within Echvi_0282at 291.645 kb on - strand, within Echvi_0282at 291.645 kb on - strand, within Echvi_0282at 291.654 kb on - strand, within Echvi_0282at 291.755 kb on + strand, within Echvi_0282at 291.776 kb on - strand, within Echvi_0282at 291.957 kb on + strand, within Echvi_0282at 292.049 kb on + strand, within Echvi_0282at 292.050 kb on - strand, within Echvi_0282at 292.050 kb on - strand, within Echvi_0282at 292.050 kb on - strand, within Echvi_0282at 292.064 kb on + strand, within Echvi_0282at 292.064 kb on + strand, within Echvi_0282at 292.085 kb on + strand, within Echvi_0282at 292.090 kb on + strand, within Echvi_0282at 292.090 kb on + strand, within Echvi_0282at 292.091 kb on - strand, within Echvi_0282

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
remove
288,307 - Echvi_0280 0.70 -0.2
288,341 + Echvi_0280 0.71 -1.3
288,494 + Echvi_0280 0.76 -0.6
288,495 - Echvi_0280 0.76 -1.0
288,495 - Echvi_0280 0.76 -2.1
288,495 - Echvi_0280 0.76 +0.4
288,495 - Echvi_0280 0.76 +1.1
288,496 + Echvi_0280 0.76 -0.4
288,508 - Echvi_0280 0.77 +1.8
288,518 + Echvi_0280 0.77 +1.1
288,618 - Echvi_0280 0.80 +0.4
288,710 + Echvi_0280 0.83 +0.6
288,711 - Echvi_0280 0.83 -0.2
288,844 - Echvi_0280 0.87 -1.7
288,844 - Echvi_0280 0.87 +0.7
288,869 + Echvi_0280 0.88 -2.2
288,989 + +0.1
288,989 + -0.6
288,990 - +0.3
289,010 + +1.7
289,031 + -1.8
289,032 - +0.4
289,161 + -0.2
289,162 - +2.0
289,215 + -0.5
289,215 + +0.0
289,216 - -1.3
289,231 - -0.1
289,244 + -0.5
289,251 + -0.3
289,284 - +0.7
289,290 + -0.4
289,290 + +1.2
289,291 - -1.2
289,322 - -0.4
289,334 + +0.2
289,335 - -0.3
289,387 + -2.0
289,387 + +0.4
289,388 - +0.7
289,388 - -0.3
289,388 - +0.4
289,388 - -0.4
289,432 - +0.9
289,526 + Echvi_0281 0.14 -1.7
289,526 + Echvi_0281 0.14 +0.3
289,530 - Echvi_0281 0.14 +1.4
289,592 + Echvi_0281 0.17 +0.3
289,593 - Echvi_0281 0.18 -0.4
289,593 - Echvi_0281 0.18 +0.9
289,593 - Echvi_0281 0.18 -1.6
289,593 - Echvi_0281 0.18 +0.7
289,593 - Echvi_0281 0.18 -3.0
289,593 - Echvi_0281 0.18 -0.2
289,596 + Echvi_0281 0.18 -0.5
289,596 + Echvi_0281 0.18 +0.1
289,597 - Echvi_0281 0.18 +0.1
289,597 - Echvi_0281 0.18 +0.1
289,597 - Echvi_0281 0.18 -1.2
289,597 - Echvi_0281 0.18 -0.3
289,597 - Echvi_0281 0.18 -0.3
289,597 - Echvi_0281 0.18 -0.6
289,602 + Echvi_0281 0.18 +1.2
289,602 + Echvi_0281 0.18 +0.9
289,602 + Echvi_0281 0.18 +0.9
289,602 + Echvi_0281 0.18 +1.4
289,603 - Echvi_0281 0.18 +0.3
289,603 - Echvi_0281 0.18 +0.1
289,617 - Echvi_0281 0.19 +0.2
289,637 - Echvi_0281 0.20 +2.6
289,637 - Echvi_0281 0.20 +0.1
289,697 + Echvi_0281 0.23 +0.4
289,710 + Echvi_0281 0.24 +0.7
289,731 + Echvi_0281 0.25 +0.4
289,734 + Echvi_0281 0.25 +2.3
289,764 + Echvi_0281 0.27 -1.2
289,785 + Echvi_0281 0.28 +0.1
289,832 - Echvi_0281 0.30 -1.0
289,832 - Echvi_0281 0.30 +0.7
289,895 + Echvi_0281 0.34 -0.1
289,927 + Echvi_0281 0.35 -0.3
289,935 + Echvi_0281 0.36 -1.3
290,022 + Echvi_0281 0.41 +1.0
290,113 + Echvi_0281 0.45 -0.4
290,113 + Echvi_0281 0.45 +1.4
290,151 + Echvi_0281 0.48 -2.1
290,319 + Echvi_0281 0.57 +3.6
290,380 - Echvi_0281 0.60 -0.7
290,558 + Echvi_0281 0.69 +1.2
290,558 + Echvi_0281 0.69 -0.8
290,581 - Echvi_0281 0.71 +0.5
290,583 - Echvi_0281 0.71 +0.6
290,592 + Echvi_0281 0.71 +1.7
290,593 - Echvi_0281 0.71 -0.2
290,625 - Echvi_0281 0.73 +0.4
290,639 + Echvi_0281 0.74 -0.7
290,694 + Echvi_0281 0.77 -0.9
290,695 - Echvi_0281 0.77 +0.2
290,699 - Echvi_0281 0.77 +1.2
290,844 + Echvi_0281 0.85 +0.2
290,845 - Echvi_0281 0.85 +0.6
290,991 + +1.0
290,991 + +0.2
291,014 - +0.5
291,165 + +0.5
291,165 + +0.1
291,166 - -0.7
291,166 - -1.2
291,166 - -0.1
291,187 + +0.5
291,200 + -0.6
291,204 + -0.4
291,223 + -0.3
291,223 + +0.8
291,223 + -0.7
291,223 + -0.1
291,223 + +0.3
291,223 + +1.6
291,224 - +0.5
291,230 - -2.0
291,235 + +0.0
291,235 + -0.7
291,235 + -2.6
291,240 + +0.2
291,240 + +1.5
291,285 + +0.4
291,286 - -0.3
291,292 + +2.9
291,292 + +0.7
291,292 + -2.0
291,293 - +0.0
291,417 - +0.7
291,417 - +0.9
291,486 - +0.4
291,554 - +0.7
291,642 + Echvi_0282 0.12 +1.3
291,644 + Echvi_0282 0.12 +1.2
291,644 + Echvi_0282 0.12 +0.6
291,644 + Echvi_0282 0.12 +0.2
291,644 + Echvi_0282 0.12 -0.0
291,644 + Echvi_0282 0.12 +0.7
291,644 + Echvi_0282 0.12 -1.0
291,645 - Echvi_0282 0.12 -0.8
291,645 - Echvi_0282 0.12 -0.6
291,645 - Echvi_0282 0.12 +0.7
291,654 - Echvi_0282 0.13 -0.5
291,755 + Echvi_0282 0.16 +1.1
291,776 - Echvi_0282 0.16 +0.9
291,957 + Echvi_0282 0.22 +0.7
292,049 + Echvi_0282 0.25 +0.3
292,050 - Echvi_0282 0.25 +0.9
292,050 - Echvi_0282 0.25 +0.1
292,050 - Echvi_0282 0.25 -1.7
292,064 + Echvi_0282 0.25 +0.0
292,064 + Echvi_0282 0.25 +1.2
292,085 + Echvi_0282 0.26 +0.5
292,090 + Echvi_0282 0.26 -0.9
292,090 + Echvi_0282 0.26 -0.6
292,091 - Echvi_0282 0.26 -1.4

Or see this region's nucleotide sequence