Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0218 and Echvi_0219 are separated by 208 nucleotides Echvi_0219 and Echvi_0220 are separated by 210 nucleotides
Echvi_0218: Echvi_0218 - luciferase family oxidoreductase, group 1, at 237,244 to 238,281
_0218
Echvi_0219: Echvi_0219 - hypothetical protein, at 238,490 to 238,591
_0219
Echvi_0220: Echvi_0220 - cysteine synthase B, at 238,802 to 239,680
_0220
Position (kb) 238
239 Strain fitness (log2 ratio) -1
0
1
2
3 at 237.508 kb on + strand, within Echvi_0218 at 237.508 kb on + strand, within Echvi_0218 at 237.530 kb on + strand, within Echvi_0218 at 237.644 kb on + strand, within Echvi_0218 at 237.698 kb on + strand, within Echvi_0218 at 237.698 kb on + strand, within Echvi_0218 at 237.698 kb on + strand, within Echvi_0218 at 237.794 kb on - strand, within Echvi_0218 at 237.805 kb on + strand, within Echvi_0218 at 237.805 kb on + strand, within Echvi_0218 at 237.805 kb on + strand, within Echvi_0218 at 237.805 kb on + strand, within Echvi_0218 at 237.806 kb on - strand, within Echvi_0218 at 237.833 kb on - strand, within Echvi_0218 at 237.863 kb on - strand, within Echvi_0218 at 237.986 kb on - strand, within Echvi_0218 at 238.047 kb on + strand, within Echvi_0218 at 238.058 kb on - strand, within Echvi_0218 at 238.058 kb on - strand, within Echvi_0218 at 238.059 kb on + strand, within Echvi_0218 at 238.059 kb on + strand, within Echvi_0218 at 238.060 kb on - strand, within Echvi_0218 at 238.212 kb on + strand at 238.257 kb on + strand at 238.293 kb on - strand at 238.323 kb on + strand at 238.324 kb on - strand at 238.373 kb on - strand at 238.431 kb on - strand at 238.447 kb on - strand at 238.457 kb on + strand at 238.457 kb on + strand at 238.458 kb on - strand at 238.458 kb on - strand at 238.459 kb on + strand at 238.472 kb on + strand at 238.473 kb on - strand at 238.491 kb on + strand at 238.501 kb on + strand, within Echvi_0219 at 238.502 kb on - strand, within Echvi_0219 at 238.557 kb on + strand, within Echvi_0219 at 238.558 kb on - strand, within Echvi_0219 at 238.579 kb on + strand, within Echvi_0219 at 238.579 kb on + strand, within Echvi_0219 at 238.579 kb on + strand, within Echvi_0219 at 238.580 kb on - strand, within Echvi_0219 at 238.607 kb on + strand at 238.609 kb on + strand at 238.609 kb on + strand at 238.610 kb on - strand at 238.623 kb on - strand at 238.623 kb on - strand at 238.629 kb on - strand at 238.637 kb on + strand at 238.638 kb on - strand at 238.638 kb on - strand at 238.638 kb on - strand at 238.640 kb on + strand at 238.640 kb on + strand at 238.645 kb on + strand at 238.646 kb on - strand at 238.659 kb on - strand at 238.659 kb on - strand at 238.742 kb on + strand at 238.762 kb on + strand at 238.762 kb on + strand at 238.762 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 237,508 + Echvi_0218 0.25 -0.9 237,508 + Echvi_0218 0.25 -0.4 237,530 + Echvi_0218 0.28 -1.0 237,644 + Echvi_0218 0.39 -0.8 237,698 + Echvi_0218 0.44 +0.7 237,698 + Echvi_0218 0.44 -1.0 237,698 + Echvi_0218 0.44 +3.1 237,794 - Echvi_0218 0.53 +1.7 237,805 + Echvi_0218 0.54 +0.2 237,805 + Echvi_0218 0.54 +1.3 237,805 + Echvi_0218 0.54 -0.0 237,805 + Echvi_0218 0.54 +0.1 237,806 - Echvi_0218 0.54 +0.8 237,833 - Echvi_0218 0.57 -0.4 237,863 - Echvi_0218 0.60 +0.6 237,986 - Echvi_0218 0.71 -0.5 238,047 + Echvi_0218 0.77 +0.3 238,058 - Echvi_0218 0.78 -0.9 238,058 - Echvi_0218 0.78 -0.5 238,059 + Echvi_0218 0.79 +1.7 238,059 + Echvi_0218 0.79 +0.4 238,060 - Echvi_0218 0.79 -0.4 238,212 + +1.3 238,257 + -1.0 238,293 - +0.7 238,323 + -0.1 238,324 - +2.0 238,373 - -0.1 238,431 - -0.3 238,447 - +0.8 238,457 + +0.9 238,457 + -0.4 238,458 - +0.0 238,458 - -0.1 238,459 + -0.6 238,472 + +0.3 238,473 - +2.0 238,491 + -0.7 238,501 + Echvi_0219 0.11 +0.6 238,502 - Echvi_0219 0.12 +0.8 238,557 + Echvi_0219 0.66 -0.2 238,558 - Echvi_0219 0.67 +0.2 238,579 + Echvi_0219 0.87 +0.9 238,579 + Echvi_0219 0.87 +0.1 238,579 + Echvi_0219 0.87 -1.3 238,580 - Echvi_0219 0.88 +0.6 238,607 + -0.4 238,609 + -0.2 238,609 + +0.5 238,610 - +0.2 238,623 - -0.9 238,623 - +0.6 238,629 - -0.1 238,637 + +0.3 238,638 - -0.1 238,638 - -0.9 238,638 - -1.3 238,640 + +0.4 238,640 + +0.9 238,645 + -0.7 238,646 - +0.1 238,659 - -0.3 238,659 - -0.1 238,742 + +1.1 238,762 + -0.3 238,762 + +1.1 238,762 + +0.5
Or see this region's nucleotide sequence