Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0092

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
90,580	-		Echvi_0091	0.30	-0.8
90,825	-		Echvi_0091	0.53	+0.6
90,847	+		Echvi_0091	0.55	-1.2
90,847	+		Echvi_0091	0.55	-0.5
90,848	-		Echvi_0091	0.55	-0.6
90,877	+		Echvi_0091	0.57	-0.6
91,296	-				-0.9
91,346	+				+0.1
91,346	+				+0.1
91,347	-				-0.6
91,348	+				-0.0
91,348	+				+0.1
91,348	+				-0.7
91,348	+				-0.8
91,349	-				+0.7
91,408	-				-1.0
91,426	+				+1.0
91,426	+				+1.1
91,671	+		Echvi_0092	0.26	-3.5
91,671	+		Echvi_0092	0.26	-3.0
91,673	+		Echvi_0092	0.26	-1.1
91,875	+		Echvi_0092	0.55	-3.5
91,876	-		Echvi_0092	0.55	+0.2
91,876	-		Echvi_0092	0.55	-2.1
91,953	+		Echvi_0092	0.66	-1.8
92,189	-				-2.2
92,223	-				+0.2
92,351	+				+1.2
92,352	-				-0.4
92,352	-				-0.1
92,352	-				-0.8
92,352	-				+0.2
92,365	+				-0.7
92,378	-				-0.1
92,412	-				+0.7
92,434	+				+0.9
92,447	+				+1.7
92,448	-				-2.0
92,448	-				-1.3
92,509	+		Echvi_0093	0.11	-0.5
92,515	-		Echvi_0093	0.11	-0.6
92,533	+		Echvi_0093	0.13	+1.2
92,557	-		Echvi_0093	0.15	+1.7
92,557	-		Echvi_0093	0.15	-1.3
92,687	+		Echvi_0093	0.26	-0.3
92,687	+		Echvi_0093	0.26	-1.5
92,688	-		Echvi_0093	0.26	+0.4
92,810	+		Echvi_0093	0.37	+2.3
93,068	+		Echvi_0093	0.60	-0.5
93,162	+		Echvi_0093	0.69	-0.4
93,163	-		Echvi_0093	0.69	+0.2
93,190	+		Echvi_0093	0.71	+0.4