Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0086 and Echvi_0087 are separated by 32 nucleotides Echvi_0087 and Echvi_0088 are separated by 84 nucleotides
Echvi_0086: Echvi_0086 - Glycosyltransferases, probably involved in cell wall biogenesis, at 86,080 to 87,198
_0086
Echvi_0087: Echvi_0087 - crossover junction endodeoxyribonuclease RuvC, at 87,231 to 87,800
_0087
Echvi_0088: Echvi_0088 - thiamine-monophosphate kinase, at 87,885 to 88,934
_0088
Position (kb) 87
88 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 86.236 kb on + strand, within Echvi_0086 at 86.239 kb on + strand, within Echvi_0086 at 86.245 kb on + strand, within Echvi_0086 at 86.256 kb on - strand, within Echvi_0086 at 86.257 kb on + strand, within Echvi_0086 at 86.257 kb on + strand, within Echvi_0086 at 86.257 kb on + strand, within Echvi_0086 at 86.258 kb on - strand, within Echvi_0086 at 86.258 kb on - strand, within Echvi_0086 at 86.258 kb on - strand, within Echvi_0086 at 86.279 kb on - strand, within Echvi_0086 at 86.338 kb on + strand, within Echvi_0086 at 86.471 kb on + strand, within Echvi_0086 at 86.515 kb on + strand, within Echvi_0086 at 86.519 kb on + strand, within Echvi_0086 at 86.519 kb on + strand, within Echvi_0086 at 86.520 kb on - strand, within Echvi_0086 at 86.520 kb on - strand, within Echvi_0086 at 86.566 kb on + strand, within Echvi_0086 at 86.566 kb on + strand, within Echvi_0086 at 86.566 kb on + strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.569 kb on - strand, within Echvi_0086 at 86.632 kb on - strand, within Echvi_0086 at 86.823 kb on + strand, within Echvi_0086 at 86.824 kb on - strand, within Echvi_0086 at 86.857 kb on - strand, within Echvi_0086 at 86.895 kb on + strand, within Echvi_0086 at 86.896 kb on - strand, within Echvi_0086 at 86.896 kb on - strand, within Echvi_0086 at 86.902 kb on - strand, within Echvi_0086 at 86.977 kb on - strand, within Echvi_0086 at 87.136 kb on + strand at 87.136 kb on + strand at 87.137 kb on - strand at 87.137 kb on - strand at 87.137 kb on - strand at 87.229 kb on + strand at 87.230 kb on - strand at 87.242 kb on - strand at 87.856 kb on + strand at 87.856 kb on + strand at 87.857 kb on - strand at 87.857 kb on - strand at 87.863 kb on + strand at 87.880 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 86,236 + Echvi_0086 0.14 +0.7 86,239 + Echvi_0086 0.14 +0.7 86,245 + Echvi_0086 0.15 -0.3 86,256 - Echvi_0086 0.16 +1.2 86,257 + Echvi_0086 0.16 -0.4 86,257 + Echvi_0086 0.16 +0.0 86,257 + Echvi_0086 0.16 +0.1 86,258 - Echvi_0086 0.16 +0.7 86,258 - Echvi_0086 0.16 +0.8 86,258 - Echvi_0086 0.16 -1.1 86,279 - Echvi_0086 0.18 +2.1 86,338 + Echvi_0086 0.23 -1.8 86,471 + Echvi_0086 0.35 +0.2 86,515 + Echvi_0086 0.39 -0.8 86,519 + Echvi_0086 0.39 +0.3 86,519 + Echvi_0086 0.39 +1.9 86,520 - Echvi_0086 0.39 +1.1 86,520 - Echvi_0086 0.39 +0.4 86,566 + Echvi_0086 0.43 +0.7 86,566 + Echvi_0086 0.43 -1.1 86,566 + Echvi_0086 0.43 +0.6 86,567 - Echvi_0086 0.44 +1.9 86,567 - Echvi_0086 0.44 -0.6 86,567 - Echvi_0086 0.44 +0.3 86,567 - Echvi_0086 0.44 -0.7 86,567 - Echvi_0086 0.44 +2.3 86,567 - Echvi_0086 0.44 +1.4 86,567 - Echvi_0086 0.44 -0.3 86,569 - Echvi_0086 0.44 +1.0 86,632 - Echvi_0086 0.49 +2.3 86,823 + Echvi_0086 0.66 -0.1 86,824 - Echvi_0086 0.66 +1.6 86,857 - Echvi_0086 0.69 -0.1 86,895 + Echvi_0086 0.73 +0.5 86,896 - Echvi_0086 0.73 -0.3 86,896 - Echvi_0086 0.73 +0.1 86,902 - Echvi_0086 0.73 +0.9 86,977 - Echvi_0086 0.80 +3.1 87,136 + -0.8 87,136 + +1.3 87,137 - +0.6 87,137 - +0.8 87,137 - +0.8 87,229 + +0.6 87,230 - -1.7 87,242 - -1.1 87,856 + +0.3 87,856 + +0.2 87,857 - +0.4 87,857 - +0.7 87,863 + -1.1 87,880 - -0.4
Or see this region's nucleotide sequence