Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0078

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0076 and Echvi_0077 are separated by 6 nucleotidesEchvi_0077 and Echvi_0078 are separated by 61 nucleotidesEchvi_0078 and Echvi_0079 are separated by 600 nucleotidesEchvi_0079 and Echvi_0080 are separated by 207 nucleotides Echvi_0076: Echvi_0076 - Biopolymer transport protein, at 78,229 to 78,861 _0076 Echvi_0077: Echvi_0077 - hypothetical protein, at 78,868 to 79,197 _0077 Echvi_0078: Echvi_0078 - Biopolymer transport proteins, at 79,259 to 80,074 _0078 Echvi_0079: Echvi_0079 - tRNA, at 80,675 to 80,765 _0079 Echvi_0080: Echvi_0080 - L-asparaginases, type I, at 80,973 to 82,049 _0080 Position (kb) 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2at 79.247 kb on - strandat 80.219 kb on - strandat 80.225 kb on + strandat 80.225 kb on + strandat 80.244 kb on + strandat 80.245 kb on - strandat 80.263 kb on - strandat 80.278 kb on + strandat 80.278 kb on + strandat 80.282 kb on + strandat 80.342 kb on + strandat 80.342 kb on + strandat 80.343 kb on - strandat 80.383 kb on + strandat 80.384 kb on - strandat 80.384 kb on - strandat 80.474 kb on - strandat 80.531 kb on + strandat 80.672 kb on + strandat 80.673 kb on - strandat 80.721 kb on - strand, within Echvi_0079at 80.798 kb on - strandat 80.838 kb on + strandat 80.839 kb on - strandat 80.961 kb on - strandat 81.057 kb on + strandat 81.057 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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79,247 - -0.3
80,219 - -0.1
80,225 + +0.2
80,225 + -1.0
80,244 + -0.6
80,245 - -0.6
80,263 - -2.3
80,278 + +0.3
80,278 + +0.2
80,282 + +1.7
80,342 + -1.3
80,342 + +2.7
80,343 - -0.3
80,383 + -0.2
80,384 - +0.3
80,384 - -0.1
80,474 - +0.9
80,531 + +0.3
80,672 + -0.3
80,673 - +0.2
80,721 - Echvi_0079 0.51 +0.4
80,798 - -0.3
80,838 + +0.6
80,839 - -1.0
80,961 - -2.2
81,057 + -0.9
81,057 + -0.3

Or see this region's nucleotide sequence