Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0054

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
49,630	+		Echvi_0053	0.32	-0.3
49,630	+		Echvi_0053	0.32	-0.6
49,631	-		Echvi_0053	0.32	-0.6
49,631	-		Echvi_0053	0.32	+0.6
49,631	-		Echvi_0053	0.32	+1.7
49,716	+		Echvi_0053	0.39	-0.8
49,716	+		Echvi_0053	0.39	+0.6
49,717	-		Echvi_0053	0.39	-0.4
49,717	-		Echvi_0053	0.39	-0.3
49,717	-		Echvi_0053	0.39	-0.3
49,768	+		Echvi_0053	0.43	+0.8
49,873	+		Echvi_0053	0.51	+0.4
50,049	-		Echvi_0053	0.65	+0.5
50,052	-		Echvi_0053	0.65	-0.9
50,114	-		Echvi_0053	0.70	+0.2
50,114	-		Echvi_0053	0.70	-0.5
50,117	+		Echvi_0053	0.70	+1.7
50,118	-		Echvi_0053	0.70	-0.6
50,118	-		Echvi_0053	0.70	-0.5
50,125	-		Echvi_0053	0.71	-2.3
50,125	-		Echvi_0053	0.71	+0.6
50,193	+		Echvi_0053	0.76	-0.9
50,314	-		Echvi_0053	0.85	-0.4
50,314	-		Echvi_0053	0.85	-0.4
50,317	-		Echvi_0053	0.85	+0.2
50,476	+				-1.0
50,476	+				-0.5
50,477	-				+0.3
50,477	-				-0.4
50,515	-				-1.8
50,583	+				-0.5
50,584	-				-0.3
50,593	+				+0.2
50,594	-				-1.6
50,621	+				-2.3
50,625	+				-1.2
50,645	+				+0.0
50,697	-		Echvi_0054	0.12	+0.8
50,806	+		Echvi_0054	0.25	+0.6
50,806	+		Echvi_0054	0.25	-0.4
50,807	-		Echvi_0054	0.25	-0.2
50,992	+		Echvi_0054	0.47	+1.3
50,993	-		Echvi_0054	0.47	+0.0
51,015	+		Echvi_0054	0.50	-0.2
51,016	-		Echvi_0054	0.50	+0.8
51,054	+		Echvi_0054	0.55	+0.2
51,251	+		Echvi_0054	0.78	+1.2
51,251	+		Echvi_0054	0.78	+1.5
51,309	-		Echvi_0054	0.85	-0.1
51,309	-		Echvi_0054	0.85	+0.4
51,393	-				+1.2
51,492	+				-1.4
51,493	-				-1.1
51,493	-				+0.7
51,531	+				-1.3
51,564	+				-1.1
51,564	+				-0.4
51,564	+				+0.7
51,564	+				-0.3
51,565	-				+0.7
51,565	-				+0.9
51,573	+				-0.5
51,574	-				-1.0
51,574	-				+1.9
51,574	-				+0.0
51,575	+				-0.8
51,575	+				-0.3
51,802	-		Echvi_0055	0.19	-0.2
51,802	-		Echvi_0055	0.19	+0.6
51,806	+		Echvi_0055	0.19	+0.7
51,876	+		Echvi_0055	0.25	-0.1
51,885	-		Echvi_0055	0.26	+0.1
51,893	+		Echvi_0055	0.27	+0.9
51,894	-		Echvi_0055	0.27	+0.5
51,957	+		Echvi_0055	0.32	-1.8
52,035	-		Echvi_0055	0.38	-0.6
52,052	+		Echvi_0055	0.39	-1.6
52,053	-		Echvi_0055	0.40	+0.2
52,053	-		Echvi_0055	0.40	-0.1
52,103	+		Echvi_0055	0.44	-0.8
52,236	+		Echvi_0055	0.54	-0.6
52,237	-		Echvi_0055	0.54	+1.0
52,261	-		Echvi_0055	0.56	+0.2
52,314	+		Echvi_0055	0.61	-0.3
52,314	+		Echvi_0055	0.61	+0.2
52,314	+		Echvi_0055	0.61	+0.9
52,315	-		Echvi_0055	0.61	-0.4
52,315	-		Echvi_0055	0.61	+1.3
52,315	-		Echvi_0055	0.61	+1.3
52,331	+		Echvi_0055	0.62	-0.8
52,338	+		Echvi_0055	0.63	+1.7
52,339	-		Echvi_0055	0.63	-0.3
52,384	+		Echvi_0055	0.66	-1.1
52,407	+		Echvi_0055	0.68	+0.4
52,407	+		Echvi_0055	0.68	-1.1
52,413	+		Echvi_0055	0.69	+0.3
52,420	-		Echvi_0055	0.69	-1.7
52,427	-		Echvi_0055	0.70	+0.7