Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0035

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
32,721	+		Echvi_0034	0.55	-1.4
32,722	-				+0.4
32,726	-		Echvi_0034	0.56	+0.7
32,828	-		Echvi_0034	0.62	+0.9
32,828	-		Echvi_0034	0.62	-1.3
32,830	-		Echvi_0034	0.62	+0.0
33,314	-				-0.6
33,314	-				-2.3
33,354	-				-0.5
33,473	-				-0.2
33,490	+				+0.7
33,490	+				-0.9
33,554	+				-1.6
33,634	-				-1.4
33,638	+				-0.1
33,658	+				-2.2
33,659	-				-0.3
33,670	+				-0.8
33,671	-				-0.6
33,729	+				-1.5
33,855	+		Echvi_0035	0.19	-1.5
33,856	-		Echvi_0035	0.19	-2.5
33,886	+		Echvi_0035	0.21	-1.0
34,115	+		Echvi_0035	0.39	-1.6
34,115	+		Echvi_0035	0.39	-1.6
34,116	-		Echvi_0035	0.39	-0.6
34,116	-		Echvi_0035	0.39	+0.0
34,147	-		Echvi_0035	0.41	-0.7
34,183	+		Echvi_0035	0.44	-2.1
34,184	-		Echvi_0035	0.44	-1.2
34,184	-		Echvi_0035	0.44	-0.8
34,346	-		Echvi_0035	0.57	-1.2
34,427	+		Echvi_0035	0.63	+0.2
34,427	+		Echvi_0035	0.63	-0.6
34,427	+		Echvi_0035	0.63	+2.0
34,445	-		Echvi_0035	0.64	-0.4
34,570	+		Echvi_0035	0.74	-1.6
34,571	-		Echvi_0035	0.74	+0.2
34,603	-		Echvi_0035	0.76	-0.3
34,626	-		Echvi_0035	0.78	-1.1
34,631	+		Echvi_0035	0.79	-1.3
34,631	+		Echvi_0035	0.79	-0.1
34,632	-		Echvi_0035	0.79	-0.1
34,632	-		Echvi_0035	0.79	+0.4
34,677	+		Echvi_0035	0.82	+0.2
34,678	-		Echvi_0035	0.82	-1.9
34,678	-		Echvi_0035	0.82	-2.1
34,678	-		Echvi_0035	0.82	+1.0
34,683	-		Echvi_0035	0.83	-2.6
34,683	-		Echvi_0035	0.83	-0.3
34,686	+		Echvi_0035	0.83	-0.9
34,686	+		Echvi_0035	0.83	-0.1
34,687	-		Echvi_0035	0.83	-0.1
34,689	+		Echvi_0035	0.83	+0.7
34,694	+		Echvi_0035	0.83	+1.0
34,695	-		Echvi_0035	0.84	-0.8
34,731	-		Echvi_0035	0.86	-0.1
34,852	-				-2.8
34,881	-				-0.7
34,884	-				-1.4
34,938	+				-0.3
35,242	+				-0.8
35,242	+				+0.4
35,242	+				+0.3
35,273	+				+1.1
35,309	+				+0.4
35,354	+		Echvi_0037	0.15	+0.7
35,354	+		Echvi_0037	0.15	+0.2
35,355	-		Echvi_0037	0.15	-1.7
35,376	-		Echvi_0037	0.18	-1.1
35,377	+		Echvi_0037	0.18	-0.8
35,377	+		Echvi_0037	0.18	-0.6
35,377	+		Echvi_0037	0.18	-1.4
35,377	+		Echvi_0037	0.18	+0.3
35,378	-		Echvi_0037	0.19	+0.3
35,378	-		Echvi_0037	0.19	+0.7
35,378	-		Echvi_0037	0.19	-0.3
35,378	-		Echvi_0037	0.19	-0.8
35,378	-		Echvi_0037	0.19	+1.4
35,388	+		Echvi_0037	0.20	-2.3
35,451	-		Echvi_0037	0.28	+1.3
35,452	+		Echvi_0037	0.29	+0.4
35,570	-		Echvi_0037	0.45	+0.6
35,570	-		Echvi_0037	0.45	-1.3
35,604	+		Echvi_0037	0.49	+0.9
35,604	+		Echvi_0037	0.49	+0.3
35,604	+		Echvi_0037	0.49	+2.2
35,728	+		Echvi_0037	0.66	+0.4