Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0019 and Echvi_0020 are separated by 351 nucleotides Echvi_0020 and Echvi_0021 are separated by 71 nucleotides Echvi_0021 and Echvi_0022 are separated by 2 nucleotides Echvi_0022 and Echvi_0023 are separated by 4 nucleotides
Echvi_0019: Echvi_0019 - hypothetical protein, at 17,776 to 18,441
_0019
Echvi_0020: Echvi_0020 - conserved hypothetical protein YmdA/YtgF, at 18,793 to 20,352
_0020
Echvi_0021: Echvi_0021 - Cell division protein ZapA., at 20,424 to 20,708
_0021
Echvi_0022: Echvi_0022 - hypothetical protein, at 20,711 to 20,995
_0022
Echvi_0023: Echvi_0023 - phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial, at 21,000 to 23,411
_0023
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.866 kb on - strand, within Echvi_0019 at 17.887 kb on + strand, within Echvi_0019 at 17.891 kb on + strand, within Echvi_0019 at 17.891 kb on + strand, within Echvi_0019 at 17.913 kb on + strand, within Echvi_0019 at 17.913 kb on + strand, within Echvi_0019 at 17.914 kb on - strand, within Echvi_0019 at 17.915 kb on + strand, within Echvi_0019 at 17.916 kb on - strand, within Echvi_0019 at 17.949 kb on + strand, within Echvi_0019 at 17.950 kb on - strand, within Echvi_0019 at 17.955 kb on + strand, within Echvi_0019 at 17.956 kb on - strand, within Echvi_0019 at 18.056 kb on - strand, within Echvi_0019 at 18.056 kb on - strand, within Echvi_0019 at 18.058 kb on + strand, within Echvi_0019 at 18.152 kb on + strand, within Echvi_0019 at 18.152 kb on + strand, within Echvi_0019 at 18.153 kb on - strand, within Echvi_0019 at 18.178 kb on - strand, within Echvi_0019 at 18.180 kb on - strand, within Echvi_0019 at 18.276 kb on + strand, within Echvi_0019 at 18.277 kb on - strand, within Echvi_0019 at 18.277 kb on - strand, within Echvi_0019 at 18.336 kb on + strand, within Echvi_0019 at 18.427 kb on - strand at 18.427 kb on - strand at 18.467 kb on + strand at 18.505 kb on - strand at 18.685 kb on - strand at 18.726 kb on - strand at 18.728 kb on - strand at 18.731 kb on + strand at 18.744 kb on + strand at 18.794 kb on + strand at 20.353 kb on - strand at 20.362 kb on - strand at 20.370 kb on - strand at 20.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 17,866 - Echvi_0019 0.14 +0.9 17,887 + Echvi_0019 0.17 -0.6 17,891 + Echvi_0019 0.17 +0.2 17,891 + Echvi_0019 0.17 +1.4 17,913 + Echvi_0019 0.21 +0.2 17,913 + Echvi_0019 0.21 -0.1 17,914 - Echvi_0019 0.21 +1.2 17,915 + Echvi_0019 0.21 -0.5 17,916 - Echvi_0019 0.21 -1.5 17,949 + Echvi_0019 0.26 -0.2 17,950 - Echvi_0019 0.26 -0.3 17,955 + Echvi_0019 0.27 +0.0 17,956 - Echvi_0019 0.27 +0.2 18,056 - Echvi_0019 0.42 +2.6 18,056 - Echvi_0019 0.42 +0.4 18,058 + Echvi_0019 0.42 +1.2 18,152 + Echvi_0019 0.56 -0.5 18,152 + Echvi_0019 0.56 -1.8 18,153 - Echvi_0019 0.57 +0.7 18,178 - Echvi_0019 0.60 -0.4 18,180 - Echvi_0019 0.61 +0.2 18,276 + Echvi_0019 0.75 -1.3 18,277 - Echvi_0019 0.75 +1.3 18,277 - Echvi_0019 0.75 +1.5 18,336 + Echvi_0019 0.84 -0.6 18,427 - -1.5 18,427 - +0.4 18,467 + +1.2 18,505 - -1.8 18,685 - -0.4 18,726 - -0.3 18,728 - -0.0 18,731 + +0.7 18,744 + +1.1 18,794 + +1.0 20,353 - +0.7 20,362 - -1.7 20,370 - -0.9 20,998 + -0.8
Or see this region's nucleotide sequence