Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29450

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29440 and ABID97_RS29445 are separated by 42 nucleotidesABID97_RS29445 and ABID97_RS29450 are separated by 46 nucleotidesABID97_RS29450 and ABID97_RS29455 are separated by 82 nucleotides ABID97_RS29440: ABID97_RS29440 - MoaF C-terminal domain-containing protein, at 812,030 to 812,830 _RS29440 ABID97_RS29445: ABID97_RS29445 - nuclear transport factor 2 family protein, at 812,873 to 813,262 _RS29445 ABID97_RS29450: ABID97_RS29450 - aldehyde dehydrogenase family protein, at 813,309 to 814,811 _RS29450 ABID97_RS29455: ABID97_RS29455 - ABC transporter substrate-binding protein, at 814,894 to 816,114 _RS29455 Position (kb) 813 814 815Strain fitness (log2 ratio) -1 0 1 2at 812.511 kb on - strand, within ABID97_RS29440at 812.540 kb on + strand, within ABID97_RS29440at 812.622 kb on - strand, within ABID97_RS29440at 812.642 kb on + strand, within ABID97_RS29440at 812.642 kb on + strand, within ABID97_RS29440at 812.804 kb on + strandat 813.702 kb on + strand, within ABID97_RS29450at 813.783 kb on + strand, within ABID97_RS29450at 813.783 kb on + strand, within ABID97_RS29450at 814.843 kb on + strandat 814.843 kb on + strandat 815.054 kb on - strand, within ABID97_RS29455at 815.372 kb on - strand, within ABID97_RS29455

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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812,511 - ABID97_RS29440 0.60 -0.2
812,540 + ABID97_RS29440 0.64 -0.9
812,622 - ABID97_RS29440 0.74 +0.0
812,642 + ABID97_RS29440 0.76 -0.3
812,642 + ABID97_RS29440 0.76 +0.5
812,804 + +1.3
813,702 + ABID97_RS29450 0.26 -1.5
813,783 + ABID97_RS29450 0.32 -0.1
813,783 + ABID97_RS29450 0.32 +1.8
814,843 + +1.4
814,843 + +0.4
815,054 - ABID97_RS29455 0.13 +0.1
815,372 - ABID97_RS29455 0.39 -0.3

Or see this region's nucleotide sequence