Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29355 and ABID97_RS29360 are separated by 156 nucleotides ABID97_RS29360 and ABID97_RS29365 are separated by 8 nucleotides ABID97_RS29365 and ABID97_RS29370 are separated by 6 nucleotides
ABID97_RS29355: ABID97_RS29355 - bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase, at 796,302 to 797,918
_RS29355
ABID97_RS29360: ABID97_RS29360 - alcohol dehydrogenase catalytic domain-containing protein, at 798,075 to 799,184
_RS29360
ABID97_RS29365: ABID97_RS29365 - cupin domain-containing protein, at 799,193 to 799,744
_RS29365
ABID97_RS29370: ABID97_RS29370 - FCD domain-containing protein, at 799,751 to 800,470
_RS29370
Position (kb) 798
799
800 Strain fitness (log2 ratio) -1
0
1
2
3 at 797.279 kb on - strand, within ABID97_RS29355 at 797.428 kb on + strand, within ABID97_RS29355 at 797.429 kb on - strand, within ABID97_RS29355 at 797.678 kb on - strand, within ABID97_RS29355 at 798.349 kb on - strand, within ABID97_RS29360 at 798.349 kb on - strand, within ABID97_RS29360 at 798.421 kb on - strand at 798.436 kb on - strand, within ABID97_RS29360 at 798.478 kb on - strand, within ABID97_RS29360 at 798.591 kb on + strand, within ABID97_RS29360 at 798.592 kb on - strand, within ABID97_RS29360 at 799.219 kb on + strand at 799.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 797,279 - ABID97_RS29355 0.60 +0.4 797,428 + ABID97_RS29355 0.70 +0.0 797,429 - ABID97_RS29355 0.70 -0.1 797,678 - ABID97_RS29355 0.85 -0.6 798,349 - ABID97_RS29360 0.25 -0.5 798,349 - ABID97_RS29360 0.25 -0.2 798,421 - +3.3 798,436 - ABID97_RS29360 0.33 -0.5 798,478 - ABID97_RS29360 0.36 +1.6 798,591 + ABID97_RS29360 0.46 -0.1 798,592 - ABID97_RS29360 0.47 +0.3 799,219 + +0.7 799,757 - +0.3
Or see this region's nucleotide sequence